Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20glauca_20[genbank_20GCA_5F900079185.1_202016-04-15] 5,338 sequences; 48,746,359 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq3256 114 1e-20 seq3208 111 2e-19 seq236 111 2e-19 seq2275 93.3 4e-14 seq1528 89.7 5e-13 >seq3256 Length=796958 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||||| ||||| || ||||| ||||| || || Sbjct 723856 CCACCACGGAGACGGAGAACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAG 723797 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| || ||||||||||| |||||| |||||||||||| || || Sbjct 723796 AGAGTGCGGCCATCTTCCAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGGGGG 723737 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| ||||| || | | || | | ||| | || ||||| Sbjct 723736 ATACCTTCCTTGTCTTGGATCTTTTGCTTCACATTGTCGATAGAGTCAGAGGATTCCACT 723677 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | |||||||| ||||| || || || || ||||||||| Sbjct 723676 TCCAGAGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCATA 723629 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||||| ||||| |||||||| ||||| || || Sbjct 724312 CCACCACGGAGACGGAGAACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAG 724253 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | ||||||||||| |||||| |||||| || || || || Sbjct 724252 AGCGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGTTGGTCTGGGGGG 724193 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| ||||| || | | || | | ||| | || ||||| Sbjct 724192 ATACCTTCCTTGTCTTGGATCTTTTGCTTCACATTGTCGATAGAGTCCGAGGATTCCACT 724133 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||| || ||||| || || || || ||||||||| Sbjct 724132 TCCAGAGTGATTGTCTTACCAGTCAAGGTCTTCACAAAGATTTGCATA 724085 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||| |||||||| ||||| || || || || | ||||||||||| || || Sbjct 724510 GTAGATTCTTTTTGGATGTTGTAGTCAGACAAAGTACGACCATCTTCGAGCTGCTTCCCG 724451 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| ||||||||| || || || || ||||| ||||| ||| ||||| || Sbjct 724450 GCAAAGATCAAACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGATCTTTTGCTTG 724391 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | | ||| | || ||||| || | || | |||||||| |||| || Sbjct 724390 ACGTTATCGATAGAGTCAGAGGATTCCACTTCCAAAGTAATAGTCTTGCCAGTCAGGGTC 724331 Query 139748 TTTACGAATATTTGCATA 139765 || || || ||||||||| Sbjct 724330 TTGACAAAGATTTGCATA 724313 >seq3208 Length=262556 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| ||||||||||| | || ||||| | || || || ||||| ||||| ||||| Sbjct 83836 GCCACCTCGTAAACGGAGCACCAAGTGTAGGGTTGATTCCTTTTGGATGTTGTAATCAGA 83895 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||||| || ||||| || ||| |||| || |||||||| || ||||| Sbjct 83896 GAGAGTGCGACCATCTTCTAGTTGTTTGCCTGCAAAGATGAGCCGTTGCTGGTCAGGAGG 83955 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||||||||| || || ||||| || | | || | | ||| | || ||||| Sbjct 83956 GATGCCTTCTTTATCTTGAATCTTTTGCTTGACGTTGTCGATAGAGTCTGAGGATTCCAC 84015 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | |||||||| ||||| || || ||||| || |||||| Sbjct 84016 TTCCAGAGTGATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCATA 84064 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || || || ||||||||||| || ||| | ||||| ||||| |||||| Sbjct 84089 TGAAGAGTCGATTCCTTTTGAATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCAAGCTGT 84148 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || ||| |||| || || || || ||||| || |||||||| || || ||| ||| Sbjct 84149 TTCCCGGCAAAGATAAGGCGCTGTTGGTCGGGTGGGATGCCTTCCTTATCTTGGATCTTT 84208 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 ||||| | | || | | ||| | | ||||| || | || | |||||||| || Sbjct 84209 TGTTTGACGTTGTCGATGGAGTCAGAAGATTCCACTTCCAATGTAATGGTCTTGCCAGTA 84268 Query 139742 AACGTTTTTACGAATATTTGCATA 139765 | |||||||| || ||||||||| Sbjct 84269 AGAGTTTTTACAAAGATTTGCATA 84292 >seq236 Length=318481 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || || || || | ||| | || ||||| | || || |||||||| ||||| || || Sbjct 111750 TGACCACCACGGAGACGGAGGACCAAGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCA 111809 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | |||| ||||| || |||||||| ||| |||| |||||||| ||||| ||| Sbjct 111810 GAGAGCGTGCGGCCATCTTCCAGTTGTTTACCGGCAAAGATAAGACGTTGTTGATCAGGA 111869 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || ||||||||||| || || ||||| || | | || | | ||| | || ||| Sbjct 111870 GGGATGCCTTCTTTATCTTGAATCTTTTGCTTGACGTTGTCGATAGAGTCAGAGGATTCC 111929 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || |||| ||| | |||||||| |||| || || || || ||||||||| Sbjct 111930 ACTTCAAGGGTGATTGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCATA 111980 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| || |||| || || || ||||||||||| ||||| Sbjct 112565 CCACCACGGAGACGGAGAACCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAG 112624 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| || ||||| || ||| |||| |||||||| || || ||||| Sbjct 112625 AGGGTGCGGCCATCTTCCAGTTGTTTGCCGGCAAAGATGAGACGTTGTTGGTCTGGAGGA 112684 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| || ||||| || | | || | | ||| | || ||||| Sbjct 112685 ATACCTTCCTTGTCTTGAATCTTTTGCTTGACATTGTCGATGGAGTCAGAGGATTCCACT 112744 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | |||||||| || | ||| || ||||| |||||||| Sbjct 112745 TCAAGGGTGATTGTCTTGCCTGTAAGCGTCTTGACGAAGATTTGCAT 112791 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || || |||||||| ||||| || || Sbjct 111981 CCACCACGGAGACGGAGGACCAAGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCCGAG 112040 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| || |||||||||||| |||| |||||||| ||||| ||||| Sbjct 112041 AGCGTGCGGCCATCTTCCAGTTGTTTACCAGCAAAGATAAGACGTTGTTGATCAGGAGGG 112100 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||||||||| || ||| ||||| || | | || | | ||| | || ||||| Sbjct 112101 ATGCCTTCTTTATCTTGGATCTTTTGCTTGACGTTGTCGATAGAGTCAGAGGATTCCACT 112160 Query 139718 TCAACGGTCACCGTCTTG 139735 |||| ||| | |||||| Sbjct 112161 TCAAGGGTGATGGTCTTG 112178 >seq2275 Length=1761326 Score = 93.3 bits (102), Expect = 4e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| || || || ||||||||||| || || | Sbjct 759205 CCACCACGGAGACGGAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGAC 759264 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||||||| || || |||||| |||| |||||||||||||| ||||| Sbjct 759265 AAAGTACGGCCGTCTTCGAGTTGCTTGCCAGCAAAGATAAGACGTTGCTGATCAGGAGGG 759324 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 || ||||| ||||| ||| ||||| || Sbjct 759325 ATACCTTCCTTGTCTTGGATCTTTTGCTT 759353 >seq1528 Length=6275 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| || || || ||||| ||||| || ||| | Sbjct 4534 CCACCACGGAGACGGAGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAC 4475 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||||| || || ||||| |||| |||||||||||||| ||||| Sbjct 4474 AAAGTGCGACCATCTTCGAGTTGCTTGCCAGCGAAGATAAGACGTTGCTGATCAGGAGGA 4415 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 || ||||| ||||| ||| ||||| || Sbjct 4414 ATACCTTCCTTGTCTTGGATCTTTTGCTT 4386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496030900129600