Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20glauca_20[genbank_20GCA_5F900079185.1_202016-04-15] 5,338 sequences; 48,746,359 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq3208 134 1e-26 seq3256 127 2e-24 seq236 123 3e-23 seq2275 93.3 4e-14 seq1528 93.3 4e-14 seq304 93.3 4e-14 >seq3208 Length=262556 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| ||||||||||| | || || || | || ||||| ||||| ||||||||||| Sbjct 83836 GCCACCTCGTAAACGGAGCACCAAGTGTAGGGTTGATTCCTTTTGGATGTTGTAATCAGA 83895 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| ||||| |||||||| || ||| |||| || |||||||| || ||||| Sbjct 83896 GAGAGTGCGACCATCTTCTAGTTGTTTGCCTGCAAAGATGAGCCGTTGCTGGTCAGGAGG 83955 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||||||||| || ||| ||||| || | | || | | ||| | || ||| || Sbjct 83956 GATGCCTTCTTTATCTTGAATCTTTTGCTTGACGTTGTCGATAGAGTCTGAGGATTCCAC 84015 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| | ||| | |||||||| ||||| || || ||||| || |||||| Sbjct 84016 TTCCAGAGTGATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCATA 84064 >seq3256 Length=796958 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| || |||| |||||||| ||||| |||||||| || Sbjct 723856 CCACCACGGAGACGGAGAACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAG 723797 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| |||||||||||||| |||||| |||||||||||| || || Sbjct 723796 AGAGTGCGGCCATCTTCCAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGGGGG 723737 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || ||||| || | | || | | ||| | || ||| ||| Sbjct 723736 ATACCTTCCTTGTCTTGGATCTTTTGCTTCACATTGTCGATAGAGTCAGAGGATTCCACT 723677 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | |||||||| ||||| || || || || ||||||||| Sbjct 723676 TCCAGAGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCATA 723629 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| || |||| |||||||||||||| |||||||| || Sbjct 724312 CCACCACGGAGACGGAGAACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAG 724253 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| | |||||||||||| |||||| |||||| || || || || Sbjct 724252 AGCGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGTTGGTCTGGGGGG 724193 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || ||||| || | | || | | ||||| || ||| ||| Sbjct 724192 ATACCTTCCTTGTCTTGGATCTTTTGCTTCACATTGTCGATAGAGTCCGAGGATTCCACT 724133 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | ||||| || ||||| || || || || ||||||||| Sbjct 724132 TCCAGAGTGATTGTCTTACCAGTCAAGGTCTTCACAAAGATTTGCATA 724085 Score = 105 bits (116), Expect = 7e-18 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 142950 GGACATGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGT 143009 || ||| || || || | ||| | || | ||| | |||||||||||||| ||||||| Sbjct 724548 GGCCATCACCACCACGGAGACGTAGGACCAGATGGAGAGTAGATTCTTTTTGGATGTTGT 724489 Query 143010 AATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGAT 143069 | || || || | |||||||| || || || ||| |||||| ||||||||| | Sbjct 724488 AGTCAGACAAAGTACGACCATCTTCGAGCTGCTTCCCGGCAAAGATCAAACGTTGCTGGT 724429 Query 143070 CGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGG 143129 | || || || ||||| ||||| || ||||| || | | || | | ||| | || Sbjct 724428 CTGGGGGGATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTATCGATAGAGTCAGAGG 724369 Query 143130 GTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| ||||| | ||| | |||||||| |||| || || || || ||||||||| Sbjct 724368 ATTCCACTTCCAAAGTAATAGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCATA 724313 >seq236 Length=318481 Score = 123 bits (136), Expect = 3e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 || || || || | ||| | || || || | || ||||||||||| |||||||| || Sbjct 111750 TGACCACCACGGAGACGGAGGACCAAGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCA 111809 Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 | |||| ||||| ||||||||||| ||| |||| |||||||| ||||| ||| Sbjct 111810 GAGAGCGTGCGGCCATCTTCCAGTTGTTTACCGGCAAAGATAAGACGTTGTTGATCAGGA 111869 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || ||||||||||| || ||| ||||| || | | || | | ||| | || ||| Sbjct 111870 GGGATGCCTTCTTTATCTTGAATCTTTTGCTTGACGTTGTCGATAGAGTCAGAGGATTCC 111929 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||||| || | |||||||| |||| || || || || ||||||||| Sbjct 111930 ACTTCAAGGGTGATTGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCATA 111980 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| ||||||| || ||||| ||||| ||||||||||| Sbjct 112565 CCACCACGGAGACGGAGAACCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAG 112624 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| |||||||| || ||| |||| |||||||| || || ||||| Sbjct 112625 AGGGTGCGGCCATCTTCCAGTTGTTTGCCGGCAAAGATGAGACGTTGTTGGTCTGGAGGA 112684 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| ||||| || | | || | | ||| | || ||| ||| Sbjct 112685 ATACCTTCCTTGTCTTGAATCTTTTGCTTGACATTGTCGATGGAGTCAGAGGATTCCACT 112744 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | |||||||| || | || || ||||| |||||||| Sbjct 112745 TCAAGGGTGATTGTCTTGCCTGTAAGCGTCTTGACGAAGATTTGCAT 112791 Score = 100 bits (110), Expect = 3e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||||||||| |||||||| || | |||| ||||| |||||||||||| Sbjct 112011 GTGGATTCTTTTTGGATGTTGTAGTCCGAGAGCGTGCGGCCATCTTCCAGTTGTTTACCA 112070 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| |||||||| ||||| ||||| ||||||||||| || || ||||| || Sbjct 112071 GCAAAGATAAGACGTTGTTGATCAGGAGGGATGCCTTCTTTATCTTGGATCTTTTGCTTG 112130 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 | | || | | ||| | || ||| ||||||| || | |||||| Sbjct 112131 ACGTTGTCGATAGAGTCAGAGGATTCCACTTCAAGGGTGATGGTCTTG 112178 >seq2275 Length=1761326 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || || |||| || ||||| ||||| |||||||| || | Sbjct 759205 CCACCACGGAGACGGAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGAC 759264 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | |||||||||||| || |||||| |||| |||||||||||||| ||||| Sbjct 759265 AAAGTACGGCCGTCTTCGAGTTGCTTGCCAGCAAAGATAAGACGTTGCTGATCAGGAGGG 759324 Query 143078 ATGCCTTCTTTGTC 143091 || ||||| ||||| Sbjct 759325 ATACCTTCCTTGTC 759338 >seq1528 Length=6275 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || || |||| || ||||| ||||| |||||||| ||| | Sbjct 4534 CCACCACGGAGACGGAGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAC 4475 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||||||||| || ||||| |||| |||||||||||||| ||||| Sbjct 4474 AAAGTGCGACCATCTTCGAGTTGCTTGCCAGCGAAGATAAGACGTTGCTGATCAGGAGGA 4415 Query 143078 ATGCCTTCTTTGTC 143091 || ||||| ||||| Sbjct 4414 ATACCTTCCTTGTC 4401 >seq304 Length=62727 Score = 93.3 bits (102), Expect = 4e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || ||||| | || ||||| ||||| |||||||| ||| | Sbjct 38823 CCACCACGGAGACGGAGGACCAAATGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAC 38882 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||||||||| || || ||| |||| |||||||||||||| ||||| Sbjct 38883 AACGTACGGCCATCTTCGAGTTGCTTGCCGGCAAAGATAAGACGTTGCTGATCAGGAGGA 38942 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106 || ||||| ||||| ||| ||||| || Sbjct 38943 ATACCTTCCTTGTCTTGAATCTTTTGCTT 38971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506980569464160