Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20glauca_20[genbank_20GCA_5F900079185.1_202016-04-15] 5,338 sequences; 48,746,359 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3208 136 9e-27 seq236 125 2e-23 seq2275 105 2e-17 seq3256 102 2e-16 seq197 89.7 1e-12 >seq3208 Length=262556 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || ||||| || ||||| || ||||| || || || | || || Sbjct 84079 AAGCACCAGATGAAGAGTCGATTCCTTTTGAATGTTGTAGTCGGAGAGTGTGCGGCCATC 84138 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| || ||||| || ||||| || || | |||||| || || || || ||||| ||||| Sbjct 84139 TTCAAGCTGTTTCCCGGCAAAGATAAGGCGCTGTTGGTCGGGTGGGATGCCTTCCTTATC 84198 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || |||||| ||| || || || | || || || ||| || || | |||||| || Sbjct 84199 TTGGATCTTTTGTTTGACGTTGTCGATGGAGTCAGAAGATTCCACTTCCAATGTAATGGT 84258 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| |||||||| ||||||||||| || ||||| Sbjct 84259 CTTGCCAGTAAGAGTTTTTACAAAGATTTGCAT 84291 Score = 127 bits (140), Expect = 5e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 |||| || ||||| || || || || || ||||| ||||| | ||| |||||||||||| Sbjct 83861 TGTAGGGTTGATTCCTTTTGGATGTTGTAATCAGAGAGAGTGCGACCATCTTCTAGTTGT 83920 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || ||||| || |||| || || |||||||| || ||||||||||| ||||||||| Sbjct 83921 TTGCCTGCAAAGATGAGCCGTTGCTGGTCAGGAGGGATGCCTTCTTTATCTTGAATCTTT 83980 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || || || | | || | ||| || || || || |||||||| ||||| Sbjct 83981 TGCTTGACGTTGTCGATAGAGTCTGAGGATTCCACTTCCAGAGTGATAGTCTTGCCAGTC 84040 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 | || || || || |||||||| Sbjct 84041 AAAGTCTTGACGAAGATCTGCAT 84063 >seq236 Length=318481 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||| || || || |||||||| || || | || ||||| |||||||| || Sbjct 111783 GTGGATTCTTTTTGGATGTTGTAGTCAGAGAGCGTGCGGCCATCTTCCAGTTGTTTACCG 111842 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | |||||||||||||| || ||||||||||| ||||||||| || Sbjct 111843 GCAAAGATAAGACGTTGTTGATCAGGAGGGATGCCTTCTTTATCTTGAATCTTTTGCTTG 111902 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | | || | ||| || || || || || ||||| ||||| || || Sbjct 111903 ACGTTGTCGATAGAGTCAGAGGATTCCACTTCAAGGGTGATTGTCTTGCCAGTCAGGGTC 111962 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 111963 TTGACAAAGATTTGCAT 111979 Score = 104 bits (114), Expect = 5e-17 Identities = 95/119 (80%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||| || || || ||||| || || || | || ||||| |||||||| ||| Sbjct 112011 GTGGATTCTTTTTGGATGTTGTAGTCCGAGAGCGTGCGGCCATCTTCCAGTTGTTTACCA 112070 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC-TTTGCTT 104480 ||||| || || | |||||||||||||| || ||||||||||| || ||| ||||||| Sbjct 112071 GCAAAGATAAGACGTTGTTGATCAGGAGGGATGCCTTCTTTATCTTGGATCTTTTGCTT 112129 >seq2275 Length=1761326 Score = 105 bits (116), Expect = 2e-17 Identities = 191/276 (69%), Gaps = 5/276 (2%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || || ||||| ||||| |||||||| ||||| || || | || ||| ||||||||||| Sbjct 1159760 GTCGCCTTTGCTGCTGTTGAAGGTATCTTCTTCTCTGGTGCATTCGCCTCTATCTTTTGG 1159701 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 | ||||| | || | ||||| || || || ||||| |||||| |||| ||| | ||| Sbjct 1159700 CTCAAGAAGCGTGGTTTGATGCCTGGCTTGACCTTCTCCAACGAACTGATCAGCCGAGAC 1159641 Query 269258 GAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTACTAATTATCTTTCAC-ACAAACC 269316 ||||| | ||| |||||| || || || |||| || ||| | ||| || |||| Sbjct 1159640 GAAGGCCTTCACACCGACTTTGCCTGCTTGCTATT---CAACCATC-TCCACTACCAACC 1159585 Query 269317 TTCTCAAGATAGAGTATACGAAATTATAGATTCAGCTGTTTCTGTAGAAACAGAATTTCT 269376 | || | |||| ||||| || | ||| || | | ||| ||||| | Sbjct 1159584 TAGCCACGCCCGAGTCCTTGAAATCATTGTCGAAGCCGTCGCCATCGAACAGGAATTCTT 1159525 Query 269377 AACGGAAGCTCTATCTATCGATCTTATCGGTATGAA 269412 || || ||||| || ||| |||||||||||||| Sbjct 1159524 GACCGACGCTCTTCCTGTCGCCCTTATCGGTATGAA 1159489 Score = 95.1 bits (104), Expect = 3e-14 Identities = 93/119 (78%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || ||||| || |||||||| | ||| | |||||||| ||||| || ||| Sbjct 759235 GTGGATTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCGTCTTCGAGTTGCTTGCCA 759294 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC-TTTGCTT 104480 ||||| || || | || ||||||||||| || ||||| || || || ||| ||||||| Sbjct 759295 GCAAAGATAAGACGTTGCTGATCAGGAGGGATACCTTCCTTGTCTTGGATCTTTTGCTT 759353 >seq3256 Length=796958 Score = 102 bits (112), Expect = 2e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||| || || || |||||||| || || | || ||||| | |||||| ||| Sbjct 724282 GTAGATTCTTTTTGGATGTTGTAGTCAGAGAGCGTACGGCCATCTTCCAATTGTTTACCA 724223 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | ||||| || || || || ||||| || || || |||||| || Sbjct 724222 GCGAAGATCAAACGTTGTTGGTCTGGGGGGATACCTTCCTTGTCTTGGATCTTTTGCTTC 724163 Query 104483 ACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | | || | ||| ||| || || || || || ||||||||||| | || Sbjct 724162 ACATTGTCGATAGAGTC-CGAGGATTCCACTTCCAGAGTGATTGTCTTACCAGTCAAGGT 724104 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 724103 CTTCACAAAGATTTGCAT 724086 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | ||||||||||| || || || |||||||| | ||| | ||| ||| Sbjct 724525 AGGACCAGATGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGACAAAGTACGACCATCT 724466 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || ||||| || | | || || || || || || ||||| || || Sbjct 724465 TCGAGCTGCTTCCCGGCAAAGATCAAACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCT 724406 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || |||||| || || || || | | || | ||| || || | ||||||||| Sbjct 724405 TGGATCTTTTGCTTGACGTTATCGATAGAGTCAGAGGATTCCACTTCCAAAGTAATAGTC 724346 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || ||||| || ||||| Sbjct 724345 TTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 724314 >seq197 Length=169696 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| | || ||||| || || || || |||||||| ||||| | || || Sbjct 118648 AAGGACCAAATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATC 118589 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| | ||| ||||||||||| || | | || |||||||| || || ||||| ||||| Sbjct 118588 TTCCAATTGCTTTCCAGCAAAGATCAAACGTTGCTGATCAGGGGGGATACCTTCCTTATC 118529 Query 104467 CTGAATCTTTGCTTTTACATTTTC 104490 || |||||| || ||||| || Sbjct 118528 TTGGATCTTTTGCTTGACATTGTC 118505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151319652265304