Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20glauca_20[genbank_20GCA_5F900079185.1_202016-04-15] 5,338 sequences; 48,746,359 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq236 122 8e-23 seq3256 116 3e-21 seq3208 113 4e-20 seq304 89.7 5e-13 seq1528 84.2 2e-11 >seq236 Length=318481 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| || | ||| ||||||||||| | ||| ||||| | ||| | ||| ||| Sbjct 112583 ACCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAGAGGGTGCGGCCATCTTCC 112642 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || ||||| ||| ||||||| | | ||| || ||||||||||||||||| ||||| | | Sbjct 112643 AGTTGTTTGCCGGCAAAGATGAGACGTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGA 112702 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || ||| |||||| | ||| | ||||| | || || |||| ||||| || || Sbjct 112703 ATCTTTTGCTTGACATTGTCGATGGAGTCAGAGGATTCCACTTCAAGGGTGATTGTCTTG 112762 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || ||||| || || || ||||| |||||| Sbjct 112763 CCTGTAAGCGTCTTGACGAAGATTTGCATG 112792 >seq3256 Length=796958 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | ||||||||||||||| | ||| || || | |||| | ||| ||| Sbjct 723838 ACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCC 723779 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || ||||| || | ||||| || | ||||||||| || || |||||||| ||||| | Sbjct 723778 AGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGGGGGATACCTTCCTTGTCTTGG 723719 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || ||| ||| || | ||| || ||||| | || || || | ||||| || || Sbjct 723718 ATCTTTTGCTTCACATTGTCGATAGAGTCAGAGGATTCCACTTCCAGAGTGATTGTCTTG 723659 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | ||| || |||||||| ||||| Sbjct 723658 CCAGTCAAAGTCTTGACAAAGATTTGCAT 723630 Score = 105 bits (116), Expect = 6e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||| ||| | ||||||||||||||| | ||| || | | | || || || ||| | Sbjct 724066 ACCAGGTGAAGAGTAGATTCCTTTTGGATGTTGTAGT--CAGAGAGCGTGCGACCATCTT 724009 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 |||| ||||| || | ||||| || | ||| || ||||| || || ||||| ||||| | Sbjct 724008 CCAGTTGTTTGCCAGCGAAGATCAAGCGTTGTTGGTCTGGGGGGATTCCTTCCTTGTCTT 723949 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || ||| ||| ||| | ||| || ||||| | || || |||| ||||| |||| Sbjct 723948 GGATCTTTTGCTTCACGTTGTCGATAGAGTCAGAGGATTCCACTTCAAGGGTGATTGTTT 723889 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| || || || || ||||| ||||| Sbjct 723888 TACCAGTCAGGGTCTTGACGAAGATTTGCAT 723858 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 ||||| || | ||||||||||||||| | ||| || | | | || || || ||| | Sbjct 723610 ACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAGT--CAGAGAGCGTGCGACCATCTT 723553 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 |||| ||||| || | ||||| || | ||| || ||||| || |||||||| ||||| | Sbjct 723552 CCAGTTGTTTGCCAGCGAAGATCAAGCGTTGTTGGTCTGGGGGGATACCTTCCTTGTCTT 723493 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || ||| ||||||| ||| || ||| | | || || || | || ||||| | Sbjct 723492 GGATCTTTTGCTTGACGTTATCGATAGAGTCGGAGGATTCCACTTCCAAGGTAATGGTCT 723433 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| | || || |||||||| ||||| Sbjct 723432 TGCCAGTCAAGGTCTTGACAAAGATTTGCAT 723402 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| || | ||||||||||||||| | ||| || || | |||| | ||| ||| Sbjct 723382 ACCAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 723323 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | || || ||| | ||||| | || |||||| ||||| || || ||||| || || | | Sbjct 723322 AATTGCTTGCCGGCGAAGATGAGTCGTTGCTGGTCTGGGGGGATTCCTTCCTTATCTTGA 723263 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || ||| ||||||| | ||| | ||| | || || || | |||||||| || Sbjct 723262 ATCTTTTGCTTGACGTTGTCGATGGAGTCGGAAGATTCAACTTCGAGAGTGATGGTCTTG 723203 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 ||||| | || || || ||||| |||||| Sbjct 723202 CCAGTCAAGGTCTTGACGAAGATTTGCATG 723173 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | ||||||||| ||||| | ||| || || | || | ||| ||| Sbjct 724294 ACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGCGTACGGCCATCTTCC 724235 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||||| || | ||||| || | ||| || ||||| || |||||||| ||||| | Sbjct 724234 AATTGTTTACCAGCGAAGATCAAACGTTGTTGGTCTGGGGGGATACCTTCCTTGTCTTGG 724175 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || ||| ||| || | ||| || ||| | | || || || | ||||| || || Sbjct 724174 ATCTTTTGCTTCACATTGTCGATAGAGTCCGAGGATTCCACTTCCAGAGTGATTGTCTTA 724115 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | || ||||||||||| ||||| Sbjct 724114 CCAGTCAAGGTCTTCACAAAGATTTGCAT 724086 >seq3208 Length=262556 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| || || | ||||||||| | || ||||||||||| | ||| ||||| Sbjct 83837 CCACCTCGTAAACGGAGCACCAAGTGTAGGGTTGATTCCTTTTGGATGTTGTAATCAGAG 83896 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| ||| || || ||||| || ||||||| | | |||||| || ||||| Sbjct 83897 AGAGTGCGACCATCTTCTAGTTGTTTGCCTGCAAAGATGAGCCGTTGCTGGTCAGGAGGG 83956 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || |||||||| || | ||| ||| ||||||| | ||| || ||| | | || || Sbjct 83957 ATGCCTTCTTTATCTTGAATCTTTTGCTTGACGTTGTCGATAGAGTCTGAGGATTCCACT 84016 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||| || || ||||| | ||| || || ||||||||||| Sbjct 84017 TCCAGAGTGATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 84063 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| || | ||| ||||||||||| | ||| || ||| | ||| | ||| || Sbjct 84082 CACCAGATGAAGAGTCGATTCCTTTTGAATGTTGTAGTCGGAGAGTGTGCGGCCATCTTC 84141 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||||| ||| ||||||| | | || || || || || || ||||| || || | Sbjct 84142 AAGCTGTTTCCCGGCAAAGATAAGGCGCTGTTGGTCGGGTGGGATGCCTTCCTTATCTTG 84201 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || ||| |||||| | ||| | ||||| || || || | || ||||| || Sbjct 84202 GATCTTTTGTTTGACGTTGTCGATGGAGTCAGAAGATTCCACTTCCAATGTAATGGTCTT 84261 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||||||||| |||||||| ||||| Sbjct 84262 GCCAGTAAGAGTTTTTACAAAGATTTGCAT 84291 >seq304 Length=62727 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| || | ||| ||||||||||| | ||| || ||| || || | ||| || Sbjct 38841 ACCAAATGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGACAACGTACGGCCATCTTCG 38900 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || || || ||| ||||||| | | ||||||||| |||||||||||||| ||||| | | Sbjct 38901 AGTTGCTTGCCGGCAAAGATAAGACGTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGA 38960 Query 94919 ATTTTTGCCTTGAC 94932 || ||| |||||| Sbjct 38961 ATCTTTTGCTTGAC 38974 >seq1528 Length=6275 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | ||| ||||||||||| | ||| || ||| || |||| ||| || Sbjct 4516 ACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGACCATCTTCG 4457 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || || || || | ||||| | | ||||||||| |||||||||||||| ||||| | Sbjct 4456 AGTTGCTTGCCAGCGAAGATAAGACGTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGG 4397 Query 94919 ATTTTTGCCTTGAC 94932 || ||| |||||| Sbjct 4396 ATCTTTTGCTTGAC 4383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448261287769680