Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20glauca_20[genbank_20GCA_5F900079185.1_202016-04-15] 5,338 sequences; 48,746,359 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq3208 113 4e-20 seq236 111 1e-19 seq3256 105 6e-18 seq2275 91.5 1e-13 seq304 89.7 4e-13 seq1528 86.0 5e-12 >seq3208 Length=262556 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||||||||| | ||||| || | ||||| | ||||| || | Sbjct 84291 ATGCAAATCTTTGTAAAAACTCTTACTGGCAAGACCATTACATTGGAAGTGGAATCTTCT 84232 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| ||||||| | |||||||||||||| || || |||||||| || ||||| ||| Sbjct 84231 GACTCCATCGACAACGTCAAACAAAAGATCCAAGATAAGGAAGGCATCCCACCCGACCAA 84172 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | | ||| || || || ||||||| | | | || ||| || ||| Sbjct 84171 CAGCGCCTTATCTTTGCCGGGAAACAGCTTGAAGATGGCCGCACACTCTCCGACTACAAC 84112 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 |||||||| ||||| || ||||| | ||| Sbjct 84111 ATTCAAAAGGAATCGACTCTTCATCTGGTG 84082 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || ||||| || | || || | ||||| || || Sbjct 84063 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATCACTCTGGAAGTGGAATCCTCA 84004 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | ||||| | ||||| ||||||||| || ||||||||||| ||||| || || Sbjct 84003 GACTCTATCGACAACGTCAAGCAAAAGATTCAAGATAAAGAAGGCATCCCTCCTGACCAG 83944 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | | ||||| ||||| ||||||| | | || ||||| ||| Sbjct 83943 CAACGGCTCATCTTTGCAGGCAAACAACTAGAAGATGGTCGCACTCTCTCTGATTACAAC 83884 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || ||||| ||||| || | || || ||| Sbjct 83883 ATCCAAAAGGAATCAACCCTACACTTGGTG 83854 >seq236 Length=318481 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || || || | || ||| | ||||| || || Sbjct 112791 ATGCAAATCTTCGTCAAGACGCTTACAGGCAAGACAATCACCCTTGAAGTGGAATCCTCT 112732 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| ||||||| | ||||| ||||||||| ||||| ||||| || ||||| || ||| Sbjct 112731 GACTCCATCGACAATGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAA 112672 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | | |||||| ||||| ||||||| | | | | || ||||| ||| Sbjct 112671 CAACGTCTCATCTTTGCCGGCAAACAACTGGAAGATGGCCGCACCCTCTCTGATTACAAC 112612 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||||| ||||| || ||||||| || Sbjct 112611 ATTCAAAAGGAATCCACTCTTCATTTGGT 112583 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | ||||| || | || ||| | ||||| || || Sbjct 111979 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACAATCACCCTTGAAGTGGAATCCTCT 111920 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | ||||| | ||||| ||||||||| || ||||||||||| ||||| |||||| Sbjct 111919 GACTCTATCGACAACGTCAAGCAAAAGATTCAAGATAAAGAAGGCATCCCTCCTGATCAA 111860 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | | ||| || ||||| ||||||| | | | || || || ||| Sbjct 111859 CAACGTCTTATCTTTGCCGGTAAACAACTGGAAGATGGCCGCACGCTCTCTGACTACAAC 111800 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||||||||| || Sbjct 111799 ATCCAAAAAGAATCCAC 111783 >seq3256 Length=796958 Score = 105 bits (116), Expect = 6e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 23984 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA 24043 || ||| |||||| | || || || || || ||||| || | || || ||||||| || Sbjct 723167 AATCAACATGCAAATCTTCGTCAAGACCTTGACTGGCAAGACCATCACTCTCGAAGTTGA 723226 Query 24044 GGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCC 24103 | |||| ||||||| | ||||| ||||||||| || || ||||| || || || Sbjct 723227 ATCTTCCGACTCCATCGACAACGTCAAGCAAAAGATTCAAGATAAGGAAGGAATCCCCCC 723286 Query 24104 CGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGA 24163 || || || |||| || | || |||||||||| | ||||||| | | | | || Sbjct 723287 AGACCAGCAACGACTCATCTTCGCCGGCAAGCAATTGGAAGATGGCCGCACTCTTTCTGA 723346 Query 24164 TTATAACATTCAAAAAGAATCTACAATTCAT 24194 || ||||||||||| |||||||| ||||| Sbjct 723347 CTACAACATTCAAAAGGAATCTACTCTTCAT 723377 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || || ||||| || | || || | ||||| || || Sbjct 724086 ATGCAAATCTTTGTGAAGACCTTGACTGGTAAGACAATCACTCTGGAAGTGGAATCCTCG 724145 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | ||||| | || || |||||||| ||||| ||||| || || || || ||| Sbjct 724146 GACTCTATCGACAATGTGAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAA 724205 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | |||| | || || || ||| | ||||||| | | | || || || ||| Sbjct 724206 CAACGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACGCTCTCTGACTACAAC 724265 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || |||||||||||||| |||| || || Sbjct 724266 ATCCAAAAAGAATCTACTCTTCACTTGGT 724294 >seq2275 Length=1761326 Score = 91.5 bits (100), Expect = 1e-13 Identities = 294/455 (65%), Gaps = 21/455 (5%) Strand=Plus/Plus Query 104602 ACTCGTTTTTCaaaaaaaTTAGTCTTGCCCTCCAGAGAAATATTATTCATAAATTCGAAA 104661 || |||||||||||||| || || ||||| | ||||| || || |||||| ||||| Sbjct 1159339 ACACGTTTTTCAAAAAAGTTGGTTTTGCCTTGGAGAGAGATCAGATCCATAAAGTCGAAG 1159398 Query 104662 GGATTCAAAGTCTTAAAATATTTTTCGTAGCCAAGCTCGATCAACAGTCGATCCGCCACA 104721 || || | || | | || || | || || ||| || || ||||| || || Sbjct 1159399 GGGTTGGTGGATTTGTAGTGCTTCTCTTGACCCAGAGCGACCAGAAGGCGATCGGCGACG 1159458 Query 104722 AATTCGATGTACTCGCACATAGAATGTGCATTCATGCCCAGCATTGCGACGGGTAAAGCG 104781 ||||||||||| | ||||||| | | ||||| || | | ||||| || | |||| Sbjct 1159459 AATTCGATGTATTGGCACATAAGCTTGGAGTTCATACCGATAAGGGCGACAGGAAGAGCG 1159518 Query 104782 TTAGTaaaaaaaTCTTTCTCGATGTCCACGGCTTCCTTAAACATGTTCAGCACCTTGCTT 104841 | || || || || | |||||| | |||||||| || || | || || Sbjct 1159519 TCGGTCAAGAATTCCTGTTCGATGGCGACGGCTTCGACAATGATTTCAAGGAC------- 1159571 Query 104842 TCAGAAAGCTTGTCCTCTTTGGCAATATATTTGTTGTAATAG-AGGCAGGCAAAGTCTGT 104900 || | || || | |||| | | | || | ||||| | |||||||||||| || Sbjct 1159572 TCGG---GCGTGGCTAGGTTGGTAGTGGAGATGGTTGAATAGCAAGCAGGCAAAGTCGGT 1159628 Query 104901 GTGCAATCCTTCATCTCTAGAAATAAGTTCGTTGCTGTAAGTCAAGCCAGG--TAGAGCC 104958 ||| | ||||| |||| || ||||||||| | | ||||||||||| | | || Sbjct 1159629 GTGAAGGCCTTCGTCTCGGCTGATCAGTTCGTTGGAGAAGGTCAAGCCAGGCATCAAACC 1159688 Query 104959 CCtttttttGTGTCTTTAATATAGTAGATGGCAGCAAAACTACCGGAGAAAAAGACACCT 105018 | || ||| | | | |||| | || || ||| ||||| |||| |||| Sbjct 1159689 ACGCTTCTTGAGCC--------AAAAGATAGAGGCGAATGCACCAGAGAAGAAGATACCT 1159740 Query 105019 TCGACGATGGCAAACGCGACCATGCGTTCGGCGAA 105053 || || ||||| ||||| | |||||||| || Sbjct 1159741 TCAACAGCAGCAAAGGCGACAAGTCGTTCGGCAAA 1159775 >seq304 Length=62727 Score = 89.7 bits (98), Expect = 4e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | ||||| | ||||| ||||||||| ||||| ||||| || ||||| ||||| Sbjct 38989 GACTCGATCGACAATGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAG 38930 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | | |||||||||||||||||||| | | | | ||| || ||| Sbjct 38929 CAACGTCTTATCTTTGCCGGCAAGCAACTCGAAGATGGCCGTACGTTGTCCGACTACAAC 38870 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || ||||| ||||| || | ||||| || Sbjct 38869 ATCCAAAAGGAATCCACTCTCCATTTGGT 38841 >seq1528 Length=6275 Score = 86.0 bits (94), Expect = 5e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||| ||||||| | ||||| |||||||| ||||| ||||| || ||||| ||||| Sbjct 4367 CGACTCCATCGACAATGTCAAGCAAAAGATCCAAGACAAGGAAGGTATTCCTCCTGATCA 4426 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || | || || | || ||||||||||||||||||| | | | ||| || || Sbjct 4427 GCAACGTCTTATCTTCGCTGGCAAGCAACTCGAAGATGGTCGCACTTTGTCCGACTACAA 4486 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||| ||||| ||||| || |||| || || Sbjct 4487 CATCCAAAAGGAATCCACTCTTCACTTGGT 4516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429908029707390