Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20glauca_20[genbank_20GCA_5F900079185.1_202016-04-15] 5,338 sequences; 48,746,359 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq319 170 2e-37 seq2275 167 3e-36 >seq319 Length=278629 Score = 170 bits (188), Expect = 2e-37 Identities = 275/391 (70%), Gaps = 11/391 (3%) Strand=Plus/Plus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985 ||| || || ||||| ||||| ||| |||| || | ||||| || | ||| || Sbjct 176274 ATCGGCGACGAATTCGATGTATTGACACATTAAGGTTGAGTTCATGCCAATGAGAGCCAC 176333 Query 92986 AGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTAT 93045 ||| |||||||| |||||||| |||| |||||| | || ||||| | |||||| Sbjct 176334 AGGGAGAGCGTCCGTCAAGAATTCTTGCTCGATCGCCACCGCTTCGACAATGATTTCCCG 176393 Query 93046 TACTCT---ACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTC 93102 || | || | ||| | || || || || ||| |||||| || || || Sbjct 176394 CACCCGGTCACGGCTAGGTTGGTTGTG---GAGATGGCCAAACAGTAAGCAGGCGAAATC 176450 Query 93103 GGTATGTAAACCTTCGTCTCGTGAT-ATCAACTCATTGCTGAATGTTAAACCTGGTAACA 93161 ||| || | |||||||||| || | || | || ||| ||| || ||||| || | || Sbjct 176451 GGTGTGGAGGCCTTCGTCTC-TGCTGATGAGTTCGTTGGAGAAGGTCAAACCAGGCATCA 176509 Query 93162 GTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCA 93221 | || ||||||||||||||||| || || ||||| ||| || || || |||||||||| Sbjct 176510 GGCCACGTTTCTTGAGCCAAAAGATGGAGGCAAAGGCACCCGAGAAGAAGATACCTTCCA 176569 Query 93222 CGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTA 93281 |||| ||||| || |||| ||| || ||||| | || || | |||||||| | Sbjct 176570 CGGCAGCAAAGGCGACAAGACGCTCAGCAAAGGATTCG---TTGCCACTGATCCACCGGA 176626 Query 93282 AAGCCCAATCGGCTTTTTTCTTAATACAAGG 93312 |||||||||| || |||||||| |||||||| Sbjct 176627 AAGCCCAATCAGCCTTTTTCTTGATACAAGG 176657 Score = 116 bits (128), Expect = 4e-21 Identities = 190/272 (70%), Gaps = 4/272 (1%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || || || ||||| |||| ||| |||||| ||||| || || || |||||| Sbjct 176824 ATATAAGTGTCGATCAACAAGCTATAGGTTTCAGCATGGATGTTTTCAATCATGATTTGG 176883 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 ||||| ||||| ||| | ||||| | ||||| ||||| | ||| | | || | Sbjct 176884 AATCCATAGAAGCATTTGGCTTCAGCGATCTTGACTTCATCCATAAAGTTTTGCACCAAG 176943 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 ||||||||||| |||||||| || |||||| || ||||| ||||| ||||| | Sbjct 176944 TTTTCATTGACGATACCATCCGAGCTTGCAAAGAAGGCCAAGATATGAGAGATAAAGTAG 177003 Query 93542 TTCTCATCATCTTTAAGC---TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCT 93598 ||||| || || | | || ||||| || | || || |||||||||| |||| Sbjct 177004 CGTTCATCGTCGTTCATCTTGTTTTCCCAGTCATTTGTGTCCTTAGAAAGATCGATTTCT 177063 Query 93599 TCGACAGTCCAAAACGATGCTTC-TGCTTTTT 93629 ||| | |||||||| || ||||| ||||| || Sbjct 177064 TCGGCGGTCCAAAAGGAGGCTTCATGCTTCTT 177095 >seq2275 Length=1761326 Score = 167 bits (184), Expect = 3e-36 Identities = 272/390 (70%), Gaps = 9/390 (2%) Strand=Plus/Plus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985 ||| || || ||||| ||||| || |||| | | | ||||| || | ||| || Sbjct 1159449 ATCGGCGACGAATTCGATGTATTGGCACATAAGCTTGGAGTTCATACCGATAAGGGCGAC 1159508 Query 92986 AGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTAT 93045 ||| ||||||||||||||||| || | ||||| | |||||||| | |||||| | Sbjct 1159509 AGGAAGAGCGTCGGTCAAGAATTCCTGTTCGATGGCGACGGCTTCGACAATGATTTCAAG 1159568 Query 93046 TACTCTACTAT---TTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTC 93102 |||| | | ||| | | || || || ||| | | ||||| |||||||| Sbjct 1159569 GACTCGGGCGTGGCTAGGTTGGTAGTG---GAGATGGTTGAATAGCAAGCAGGCAAAGTC 1159625 Query 93103 GGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAG 93162 ||| || | ||||||||||| |||| || ||| ||| || || || || | || Sbjct 1159626 GGTGTGAAGGCCTTCGTCTCGGCTGATCAGTTCGTTGGAGAAGGTCAAGCCAGGCATCAA 1159685 Query 93163 TCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCAC 93222 || || |||||||||||||| || || || || |||||| || || |||||||| || Sbjct 1159686 ACCACGCTTCTTGAGCCAAAAGATAGAGGCGAATGCACCAGAGAAGAAGATACCTTCAAC 1159745 Query 93223 GGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAA 93282 || ||||| || |||| ||||||||||| | || || | ||||||||| || Sbjct 1159746 AGCAGCAAAGGCGACAAGTCGTTCGGCAAAGGATTCG---TTGCCACTGATCCATCGGAA 1159802 Query 93283 AGCCCAATCGGCTTTTTTCTTAATACAAGG 93312 |||||| ||||| |||||||| ||||| || Sbjct 1159803 AGCCCAGTCGGCCTTTTTCTTGATACATGG 1159832 Score = 93.3 bits (102), Expect = 5e-14 Identities = 169/247 (68%), Gaps = 3/247 (1%) Strand=Plus/Plus Query 93390 TTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGA 93449 |||| | ||||| || || || ||||||||||| || || ||| | ||||| | | Sbjct 1159979 TTTCGGCATGGATGTTTTCAATCATGATTTGGAATCCATAAAAGCATTTGGCTTCAGCAA 1160038 Query 93450 TCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTG 93509 ||| ||||| | ||| ||| || || ||||| || || || || ||||| || Sbjct 1160039 TCTTGACTTCGTCCATAAAGTTCTGCACCAGGTTTTCGTTAACAATGCCGTCGGAACTTG 1160098 Query 93510 CaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC---TTATCCC 93566 |||| || ||||| | ||| ||||| | ||||||| || | | || |||| Sbjct 1160099 CAAAGAAGGCCAAGACATGAGAGATAAAGTAGCGTTCATCATTGTTCATCTTGTTTTCCC 1160158 Query 93567 AATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTT 93626 ||||| ||||| || ||||||| ||||||| | ||||| || |||||||| || Sbjct 1160159 AATCGTTGGTGTCTTTGGAGAGATCGATTTCTTCGGCGGTCCAGAAGGATGCTTCATGTT 1160218 Query 93627 TTTTGTA 93633 | ||||| Sbjct 1160219 TCTTGTA 1160225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556823643463120