Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20glauca_20[genbank_20GCA_5F900079185.1_202016-04-15] 5,338 sequences; 48,746,359 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq3208 123 3e-23 seq3256 120 3e-22 seq236 84.2 2e-11 seq1528 82.4 9e-11 >seq3208 Length=262556 Score = 123 bits (136), Expect = 3e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||||||| | || |||||||| || ||||||||||| || ||||| | Sbjct 84076 ACGAAGCACCAGATGAAGAGTCGATTCCTTTTGAATGTTGTAGTCGGAGAGTGTGCGGCC 84135 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||| || ||||| || || | |||||| ||||||| || | || ||||| Sbjct 84136 ATCTTCAAGCTGTTTCCCGGCAAAGATAAGGCGCTGTTGGTCGGGTGGGATGCCTTCCTT 84195 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 || |||||| | |||| ||| | | | | ||| |||||||| |||| || | Sbjct 84196 ATCTTGGATCTTTTGTTTGA-CGTTGTCGATGGAGTCAGAAGATTCCACTTCCAATGTAA 84254 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| || || ||||| |||||||||||||| Sbjct 84255 TGGTCTTGCCAGTAAGAGTTTTTACAAAGATTTGCAT 84291 Score = 96.9 bits (106), Expect = 4e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 46363 TTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTC 46422 || ||| |||| |||||| | ||||| || | || ||||||||||| ||||| || Sbjct 83833 TTCGCCACCTCGTAAACGGAGCACCAAGTGTAGGGTTGATTCCTTTTGGATGTTGTAATC 83892 Query 46423 GGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGC 46482 || |||||||| | || || || || ||||| || || || | || |||||||| | Sbjct 83893 AGAGAGAGTGCGACCATCTTCTAGTTGTTTGCCTGCAAAGATGAGCCGTTGCTGGTCAGG 83952 Query 46483 CGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATT 46541 || | || || || || ||||| | ||||| ||| | | | | ||| |||| Sbjct 83953 AGGGATGCCTTCTTTATCTTGAATCTTTTGCTTGA-CGTTGTCGATAGAGTCTGAGGATT 84011 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||| ||||| || ||||| |||| || || || ||||| ||||| Sbjct 84012 CCACTTCCAGAGTGATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 84063 >seq3256 Length=796958 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||| | ||| ||||||||||| |||||||| || || ||||| | || || Sbjct 723610 ACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGCGTGCGACCATCTTCC 723551 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || || ||||| ||||| |||||||| || ||||| | || | | |||||||| | Sbjct 723550 AGTTGTTTGCCAGCGAAGATCAAGCGTTGTTGGTCTGGGGGGATACCTTCCTTGTCTTGG 723491 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| | ||||| | | | | |||| |||||||| |||| || ||||| ||| Sbjct 723490 ATCTTTTGCTTGACGTTATCGATAGAGTCGGAGGATTCCACTTCCAAGGTAATGGTCTTG 723431 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| || || |||||||||||||| Sbjct 723430 CCAGTCAAGGTCTTGACAAAGATTTGCAT 723402 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||||||| | ||| || |||||||| |||||||| || | ||| || | || ||| Sbjct 724522 ACCAGATGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGACAAAGTACGACCATCTTCG 724463 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| ||||| || ||||| || |||||||| | || | | |||||||| | Sbjct 724462 AGCTGCTTCCCGGCAAAGATCAAACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGG 724403 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| | ||||| | | | | ||| |||||||| |||| || || || ||| Sbjct 724402 ATCTTTTGCTTGACGTTATCGATAGAGTCAGAGGATTCCACTTCCAAAGTAATAGTCTTG 724343 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| || || |||||||||||||| Sbjct 724342 CCAGTCAGGGTCTTGACAAAGATTTGCAT 724314 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| || | ||| ||||||||||| |||||||| || || ||||| | || || Sbjct 724066 ACCAGGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGCGTGCGACCATCTTCC 724007 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || || ||||| ||||| |||||||| || ||||| | || | | |||||||| | Sbjct 724006 AGTTGTTTGCCAGCGAAGATCAAGCGTTGTTGGTCTGGGGGGATTCCTTCCTTGTCTTGG 723947 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| | ||| | ||| | | | | ||| |||||||| || | ||||| ||||| Sbjct 723946 ATCTTTTGCTTCA-CGTTGTCGATAGAGTCAGAGGATTCCACTTCAAGGGTGATTGTTTT 723888 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| || || || ||||||||||| Sbjct 723887 ACCAGTCAGGGTCTTGACGAAGATTTGCAT 723858 Score = 109 bits (120), Expect = 6e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||||||| | ||| |||||||| || |||||||| || |||||||| | || || Sbjct 723382 ACCAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 723323 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | |||||||||||||| || | || |||||||| | || | | ||||| || Sbjct 723322 AATTGCTTGCCGGCGAAGATGAGTCGTTGCTGGTCTGGGGGGATTCCTTCCTTATCTTGA 723263 Query 46505 ATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| | ||||| ||| | | | | |||| ||||| || || | |||||||| || Sbjct 723262 ATCTTTTGCTTGA-CGTTGTCGATGGAGTCGGAAGATTCAACTTCGAGAGTGATGGTCTT 723204 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 ||| |||| || || || ||||||||||| ||| Sbjct 723203 GCCAGTCAAGGTCTTGACGAAGATTTGCATGTTG 723170 Score = 105 bits (116), Expect = 8e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| |||||||| || |||||||| | || || || || || || ||||| Sbjct 723820 TCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCCAGTTGTTTACCAGCGAAG 723761 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| || ||||| || | || | | |||||||| |||||| | ||| | | Sbjct 723760 ATCAAACGTTGCTGATCAGGGGGGATACCTTCCTTGTCTTGGATCTTTTGCTTCACATTG 723701 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | | ||| |||||||| |||| ||||| || ||||| |||| || || ||| Sbjct 723700 TCGATAGAGTCAGAGGATTCCACTTCCAGAGTGATTGTCTTGCCAGTCAAAGTCTTGACA 723641 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 723640 AAGATTTGCAT 723630 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || |||||||| |||||||| || || || || | || || | || || || ||||| Sbjct 724276 TCTTTTTGGATGTTGTAGTCAGAGAGCGTACGGCCATCTTCCAATTGTTTACCAGCGAAG 724217 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| || || ||||| | || | | |||||||| |||||| | ||| | | Sbjct 724216 ATCAAACGTTGTTGGTCTGGGGGGATACCTTCCTTGTCTTGGATCTTTTGCTTCACATTG 724157 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | | ||| |||||||| |||| ||||| || || || |||| || || ||| Sbjct 724156 TCGATAGAGTCCGAGGATTCCACTTCCAGAGTGATTGTCTTACCAGTCAAGGTCTTCACA 724097 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 724096 AAGATTTGCAT 724086 >seq236 Length=318481 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 |||||||| || ||||| || || || ||||| | || || || || |||||||| || Sbjct 112601 TCCTTTTGAATGTTGTAATCAGAGAGGGTGCGGCCATCTTCCAGTTGTTTGCCGGCAAAG 112660 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | || || ||||| | || | | |||||||| ||||| | ||||| | Sbjct 112661 ATGAGACGTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATCTTTTGCTTGACATTG 112720 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | | ||| |||||||| || | ||||| || ||||| || ||||| || || Sbjct 112721 TCGATGGAGTCAGAGGATTCCACTTCAAGGGTGATTGTCTTGCCTGTAAGCGTCTTGACG 112780 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 112781 AAGATTTGCAT 112791 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || |||||||| |||||||| || || ||||| | || || || || || ||||| || Sbjct 111789 TCTTTTTGGATGTTGTAGTCAGAGAGCGTGCGGCCATCTTCCAGTTGTTTACCGGCAAAG 111848 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | || || || || | || | || || || || ||||| | ||||| ||| Sbjct 111849 ATAAGACGTTGTTGATCAGGAGGGATGCCTTCTTTATCTTGAATCTTTTGCTTGA-CGTT 111907 Query 46523 GCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | | ||| |||||||| || | ||||| || ||||| ||||| || || || Sbjct 111908 GTCGATAGAGTCAGAGGATTCCACTTCAAGGGTGATTGTCTTGCCAGTCAGGGTCTTGAC 111967 Query 46582 AAAGATTTGCAT 46593 |||||||||||| Sbjct 111968 AAAGATTTGCAT 111979 >seq1528 Length=6275 Score = 82.4 bits (90), Expect = 9e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| ||||||||||| | |||||| | || ||||| |||||||| ||||| Sbjct 4498 TCCTTTTGGATGTTGTAGTCGGACAAAGTGCGACCATCTTCGAGTTGCTTGCCAGCGAAG 4439 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 || | || ||||| || | || | | |||||||| |||||| | ||||| Sbjct 4438 ATAAGACGTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGGATCTTTTGCTTGA 4384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565200684467760