Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20glauca_20[genbank_20GCA_5F900079185.1_202016-04-15] 5,338 sequences; 48,746,359 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq3208 113 3e-20 seq3256 96.9 2e-15 >seq3208 Length=262556 Score = 113 bits (124), Expect = 3e-20 Identities = 175/248 (71%), Gaps = 8/248 (3%) Strand=Plus/Plus Query 39478 CATATCCAA----TCATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTT 39533 ||||||||| || ||||| ||||| ||||| || ||||| || | || ||| || Sbjct 83818 CATATCCAAGGTCTCTTCGCCACCTCGTAAACGGAGCACCAAGTGTAGGGTTGATTCCTT 83877 Query 39534 TTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAA 39593 ||| || || ||||| | | | ||| |||| || | |||||| || |||| || | Sbjct 83878 TTGGATGTTGTAATCAGAGAGAGTGCGACCATCTTCTAGTTGTTTGCCTGCAAAGATGAG 83937 Query 39594 ACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCT 39651 || ||||| || | || | ||||||||| || || ||||| || | | |||| | Sbjct 83938 CCGTTGCTGGTCAGGAGGGATGCCTTCTTTATCTTGAATCTTTTGCTTGACGTTGTCGAT 83997 Query 39652 ACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAG 39711 | | ||||| | |||||| |||| ||| || || || || || ||||| || |||||| Sbjct 83998 A--GAGTCTGAGGATTCCACTTCCAGAGTGATAGTCTTGCCAGTCAAAGTCTTGACGAAG 84055 Query 39712 ATCTGCAT 39719 |||||||| Sbjct 84056 ATCTGCAT 84063 >seq3256 Length=796958 Score = 96.9 bits (106), Expect = 2e-15 Identities = 163/234 (70%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || || | ||| || |||| ||| | ||| ||||||||| || || || | Sbjct 724545 CATCACCACCACGGAGACGTAGGACCAGATGGAGAGTAGATTCTTTTTGGATGTTGTAGT 724486 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | | |||| || |||| || | || |||||| |||| || ||||| ||||| || | Sbjct 724485 CAGACAAAGTACGACCATCTTCGAGCTGCTTCCCGGCAAAGATCAAACGTTGCTGGTCTG 724426 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCT 39665 ||| | ||||| ||||| || ||||| || | | ||| || | ||| | | Sbjct 724425 GGGGGATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTATCGATA--GAGTCAGAGGA 724368 Query 39666 TTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||| ||||||||||| || || || || | || || || ||||| ||||| Sbjct 724367 TTCCACTTCCAAAGTAATAGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 724314 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || ||||| || | ||| ||||||||| || || || || | Sbjct 724312 CCACCACGGAGACGGAGAACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAG-- 724255 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 | | || || |||| ||||||||||| || | || || ||||| || || || | || Sbjct 724254 AGAGCGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGTTGGTCTGGGG 724195 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTT--AATCGTCGCTACTGTGTCTGCGCTTTC 39668 | | ||||| ||||| || ||||| || || |||| || | ||| | | ||| Sbjct 724194 GGATACCTTCCTTGTCTTGGATCTTTTGCTTCACATTGTCGATA--GAGTCCGAGGATTC 724137 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||| |||| ||| ||||| ||||| || || || || || ||||| ||||| Sbjct 724136 CACTTCCAGAGTGATTGTCTTACCAGTCAAGGTCTTCACAAAGATTTGCAT 724086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347347001219354