Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20glauca_20[genbank_20GCA_5F900079185.1_202016-04-15] 5,338 sequences; 48,746,359 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1090 203 4e-47 seq3304 114 1e-20 seq319 95.1 1e-14 >seq1090 Length=283134 Score = 203 bits (224), Expect = 4e-47 Identities = 600/924 (65%), Gaps = 2/924 (0%) Strand=Plus/Minus Query 47889 GCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGA 47948 || |||||||| || || || |||| || ||| |||| | ||||| | ||| || Sbjct 229751 GCGAGATTACAGACGGCGACTTCATCAGGGCTAGAGTATTCGACAATTTCGGTACACAGG 229692 Query 47949 TTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTG 48008 || | ||||||||||| |||| ||||| |||||| ||||||||| |||||| Sbjct 229691 TTGCTGCATTTGATAGTTCCCAGGTTTTGTTGATTAGACTTGCGGTTACATGCATCCTTG 229632 Query 48009 TAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTC 48068 |||||||| || || | |||||||| | |||| ||| | || | | ||| | | Sbjct 229631 TAAAGCATGAAGGGGTTCCCAGTTTCAGTTTGAGCTTCCAAAATGGCATACCACAGCTTT 229572 Query 48069 CTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCA 48128 |||||| || | || || |||| ||||| | | | | ||| Sbjct 229571 TGAGCCTTGATCGTTTGACGTGCGCGGCCTTCCCGTTCATATTTTTCAAAAAGCGCCTCG 229512 Query 48129 AATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAA 48188 ||||| || || |||||| | ||| |||||| ||| ||||||| | || ||||| Sbjct 229511 AATTCGTCACCCCACACATCTTGTAAACCAGGAGCTTCGCTAGGACAAAACAGGGACCAT 229452 Query 48189 TCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATA-AATAA 48247 || ||| || || | |||| || | ||| || ||||| ||||| ||| || | Sbjct 229451 TCACCATTGGCTTCCACACGCTTCATGAAGAGATCAGGGATCCAGAGAGC-ATAGAAGAG 229393 Query 48248 ATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTAT 48307 ||| | || | | ||| || ||||| |||| | || || | |||| | | Sbjct 229392 ATCACGAGCCCGGATTTCGTCTTTGCCGACATTCTTGCGGAGATCCAAAAAGGTGAAGAC 229333 Query 48308 ATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTG 48367 |||||||||||| ||||| | ||| || || | |||| |||||||| || || ||||| Sbjct 229332 ATCAGCATGCCAAGGTTCAAGATACATGGCGAAAGCACCAGGTCGTTTGTTGCCACCTTG 229273 Query 48368 ATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATAT 48427 ||| | ||| | ||||| ||||| | || | | ||| || | ||||||||| || Sbjct 229272 ATCCACATAACGAGCAGTGTTGTTGAAGACACGGAGCATAGGAAGAATACCATTGGAGTA 229213 Query 48428 ACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTAT 48487 || || || || | ||| || ||| | || | || || || | || || Sbjct 229212 GCCGTTTGTACCAGCAATGTAGGAGCCAGTGGCACGGATGTTGTGGATGTTGAGCCCGAT 229153 Query 48488 ACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTAT 48547 || ||||| |||| || ||| | ||||| || || || || || || ||||| || Sbjct 229152 CCCGCCTGCGGTTTTTGAGATTTGCGCACAGACCTTCAGTGTTTCGTAGATGCCTTCAAT 229093 Query 48548 ACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGA 48607 || || |||| | | | || ||| || | || ||| || ||| || | Sbjct 229092 GGAGTCTTCCTTCATGGTGAGCAAGAAGCAAGAGGAGAGCTGAGGACGAGGAGTACCGGC 229033 Query 48608 ATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTC 48667 ||| ||||| |||||| || || | || | || || || | | || || ||||| Sbjct 229032 ATTGAATAAGGTTGGACTGGCGTGGGTGAAGTACTTTTCCGACATGAGATTGTAGGTTTC 228973 Query 48668 AATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTG 48727 ||| | || || ||||| ||| ||||| | | |||||||| | | || ||| Sbjct 228972 GATAGCCGAGTCGATATCTTCGCCATGAATACCCACGGCCACACGCATGATAAGATGTTG 228913 Query 48728 AGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAA 48787 ||| | ||| | | |||| || |||||||||||||| || |||||| || || || Sbjct 228912 AGGACGTTCCGCCACTTTGCCGTTGATTTTCAAAAGATAAGAGCGTTCCAAAGTCTTGAA 228853 Query 48788 ACCAAAATAGTTGTATGAAAAGTC 48811 |||||| |||||||| |||||| Sbjct 228852 ACCAAAGTAGTTGTAGCCAAAGTC 228829 >seq3304 Length=726533 Score = 114 bits (126), Expect = 1e-20 Identities = 324/496 (65%), Gaps = 4/496 (1%) Strand=Plus/Plus Query 48309 TCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGA 48368 ||||||||||| ||||| | || ||||| | | || || ||||| || || |||||| Sbjct 455072 TCAGCATGCCAAGGTTCGAGGTAGATTGCAAAGGCGCCAGGACGTTTGTTGCCACCTTGA 455131 Query 48369 TCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATA 48428 || | ||| | ||||| ||||| | |||| | ||| || | | ||| ||||| Sbjct 455132 TCCACATAGCGAGCAGTGTTGTTGAAGACTCGAAGCATAGGAAGGAGACCGTTTGAGTGG 455191 Query 48429 CCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATA 48488 || ||||| || | ||| || || |||| | || || || | || ||| Sbjct 455192 CCGTTGGTGCCAGCAATGTAGGAGCCGGTAGCGCGAATGTTGTGGATGCTGAGCCCGATA 455251 Query 48489 CCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATA 48548 || || ||| | || || || | |||||| |||| || ||||| ||||| ||||| || Sbjct 455252 CCGCCAGCCGTCTTGGAGATCTGTGCACACTGTTTGAGAGTATCGTAAATCCCTTCGATC 455311 Query 48549 CTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAA 48608 ||| ||| |||| | | | ||| || |||| |||||| | ||| || | Sbjct 455312 GAATCTTCTTTCATCGTCAGCAAAAAGCAGGAGGACAGTTGCGGTCGGGGAGTGCCGGCG 455371 Query 48609 TTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCA 48668 | ||||| || ||| || || |||| | || || || | | || || ||||| Sbjct 455372 CTGAATAAGGTGGGACTGGCGTGGGTAAAGTACTTTTCAGACATGAGGTTGTAGGTTTCG 455431 Query 48669 ATAACAGAATCTATATCCCATTG--ATGTATACCTATAGATACACGCATTAACATATATT 48726 || ||| || |||| ||| | ||| || || | | |||||||| | | || || Sbjct 455432 ATGGCAGCGTCGATAT--CATGGCCATGGATCCCCACCGCCACACGCATGATTAGATGTT 455489 Query 48727 GAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAA 48786 |||||| ||| | | || ||| |||||||| || || || |||| || || | Sbjct 455490 GAGGTCGTTCCGCCACCTTTCCATTGATTTTCAAGAGGTACGAGCGCTCCAGGGTCTTGA 455549 Query 48787 AACCAAAATAGTTGTA 48802 | ||||| |||||||| Sbjct 455550 AGCCAAAGTAGTTGTA 455565 >seq319 Length=278629 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 18943 AGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAAT 19002 ||||| ||||| || || || ||||| || || || |||||||| || || | | Sbjct 176422 AGATGGCCAAACAGTAAGCAGGCGAAATCGGTGTGGAGGCCTTCGTCTCTGCTGATGAGT 176481 Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062 || || || || || |||||||||||||| || | ||| || | ||| || || || ||| Sbjct 176482 TCGTTGGAGAAGGTCAAACCAGGCATCAGGCCACGTTTCTTGAGCCAAAAGATGGAGGCA 176541 Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAG 19109 || | || || ||||| |||||||| || || ||||| || || || Sbjct 176542 AAGGCACCCGAGAAGAAGATACCTTCCACGGCAGCAAAGGCGACAAG 176588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562071293290320