Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20glauca_20[genbank_20GCA_5F900079185.1_202016-04-15] 5,338 sequences; 48,746,359 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq3208 100 2e-16 seq236 93.3 3e-14 >seq3208 Length=262556 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 48534 TCGTCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAA 48593 || ||||| || | || || | |||||| ||||| || || ||||| || |||||| Sbjct 83831 TCTTCGCCACCTCGTAAACGGAGCACCAAGTGTAGGGTTGATTCCTTTTGGATGTTGTAA 83890 Query 48594 TCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCC 48653 ||||| ||| | ||| | || || | || || || ||||| || || || || || || Sbjct 83891 TCAGAGAGAGTGCGACCATCTTCTAGTTGTTTGCCTGCAAAGATGAGCCGTTGCTGGTCA 83950 Query 48654 GTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCC 48713 | || | ||| || || || ||||||||| || || | | ||| ||||| | Sbjct 83951 GGAGGGATGCCTTCTTTATCTTGAATCTTTTGCTTGACGTTGTCGATAGAGTCTGAGGAT 84010 Query 48714 TCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| |||| || || || || || |||||||| || || || |||||||| Sbjct 84011 TCCACTTCCAGAGTGATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 84063 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| ||| || || || |||||||| ||||| || || || | || Sbjct 84074 AGACGAAGCACCAGATGAAGAGTCGATTCCTTTTGAATGTTGTAGTCGGAGAGTGTGCGG 84133 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||| || |||||||| || || |||||||| || | || | ||| ||| Sbjct 84134 CCATCTTCAAGCTGTTTCCCGGCAAAGATAAGGCGCTGTTGGTCGGGTGGGATGCCTTCC 84193 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||||||||| || | | || || || | ||||| |||| ||| Sbjct 84194 TTATCTTGGATCTTTTGTTTGACGTTGTCGATGGAGTCAGAAGATTCCACTTCCAATGTA 84253 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | |||||||||||| || ||||| Sbjct 84254 ATGGTCTTGCCAGTAAGAGTTTTTACAAAGATTTGCAT 84291 >seq236 Length=318481 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/218 (70%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || ||| || |||||||| ||||||||||| || | || | || ||| Sbjct 112583 ACCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAGAGGGTGCGGCCATCTTCC 112642 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | || || |||||||| || || || ||||| || | |||| || |||||||| | Sbjct 112643 AGTTGTTTGCCGGCAAAGATGAGACGTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGA 112702 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||||| || ||| | | || || || | ||||| || | || || || || Sbjct 112703 ATCTTTTGCTTGACATTGTCGATGGAGTCAGAGGATTCCACTTCAAGGGTGATTGTCTTG 112762 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATCGTG-TGTA 48774 || || | || || || || || ||||| ||| |||| Sbjct 112763 CCTGTAAGCGTCTTGACGAAGATTTGCATGGTGATGTA 112800 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| |||||||| || ||||| ||||| || | || | || ||| Sbjct 111771 ACCAAGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAGAGCGTGCGGCCATCTTCC 111830 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | || ||||||||||| || || || |||||||| | || | ||| || || || | Sbjct 111831 AGTTGTTTACCGGCAAAGATAAGACGTTGTTGATCAGGAGGGATGCCTTCTTTATCTTGA 111890 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||||| || || | | ||| || || | ||||| || | || || || || Sbjct 111891 ATCTTTTGCTTGACGTTGTCGATAGAGTCAGAGGATTCCACTTCAAGGGTGATTGTCTTG 111950 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||| || || ||||| || ||||| Sbjct 111951 CCAGTCAGGGTCTTGACAAAGATTTGCAT 111979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380912817390174