Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20glauca_20[genbank_20GCA_5F900079185.1_202016-04-15] 5,338 sequences; 48,746,359 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq3256 104 4e-17 seq3208 98.7 2e-15 >seq3256 Length=796958 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || || || | ||||| ||||| || || || || Sbjct 724315 ATACCACCACGGAGACGGAGAACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCA 724256 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || ||||||||||||||||| || || || | |||||||| || Sbjct 724255 GAGAGCGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGTTGGTCTGGG 724196 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || | || ||||| |||| || || ||||| Sbjct 724195 GGGATACCTTCCTTGTCTTGGATCTTTTGCTTCACATTGTCGATAGAGTCCGAGGATTCC 724136 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| || || |||||||| || || || | || || ||||| Sbjct 724135 ACTTCCAGAGTGATTGTCTTACCAGTCAAGGTCTTCACAAAGATTTGCAT 724086 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || || || | ||||| || || || || || || Sbjct 723859 ATACCACCACGGAGACGGAGAACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCA 723800 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | || |||| |||||||||||| || || || | || || ||||| Sbjct 723799 GAGAGAGTGCGGCCATCTTCCAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGG 723740 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || | || ||||| |||| || || ||||| Sbjct 723739 GGGATACCTTCCTTGTCTTGGATCTTTTGCTTCACATTGTCGATAGAGTCAGAGGATTCC 723680 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| || || || ||||| || || || | || || ||||| Sbjct 723679 ACTTCCAGAGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 723630 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||| |||||| ||||| || || || | |||||||| || || |||||||| || Sbjct 724012 TCTTCCAGTTGTTTGCCAGCGAAGATCAAGCGTTGTTGGTCTGGGGGGATTCCTTCCTTG 723953 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| || || | || || || |||| || || ||||| ||||| || || || Sbjct 723952 TCTTGGATCTTTTGCTTCACGTTGTCGATAGAGTCAGAGGATTCCACTTCAAGGGTGATT 723893 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||||||| | || || | ||| || ||||| Sbjct 723892 GTTTTACCAGTCAGGGTCTTGACGAAGATTTGCAT 723858 >seq3208 Length=262556 Score = 98.7 bits (108), Expect = 2e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || || ||||| || | || || | || || | |||||| || ||||| || | | Sbjct 83882 ATGTTGTAATCAGAGAGAGTGCGACCATCTTCTAGTTGTTTGCCTGCAAAGATGAGCCGT 83941 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || |||||||| || || |||||||||||||| || || | || || || |||| Sbjct 83942 TGCTGGTCAGGAGGGATGCCTTCTTTATCTTGAATCTTTTGCTTGACGTTGTCGATAGAG 84001 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 ||||| ||||| ||||| ||||| || || || ||||| || || || | ||| |||||| Sbjct 84002 TCTGAGGATTCCACTTCCAGAGTGATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGC 84061 Query 172068 AT 172069 || Sbjct 84062 AT 84063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905075604800400