Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20glauca_20[genbank_20GCA_5F900079185.1_202016-04-15] 5,338 sequences; 48,746,359 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1090 125 2e-23 seq2275 93.3 1e-13 seq1141 91.5 4e-13 seq2288 89.7 2e-12 seq690 89.7 2e-12 seq4683 87.8 5e-12 >seq1090 Length=283134 Score = 125 bits (138), Expect = 2e-23 Identities = 470/731 (64%), Gaps = 7/731 (1%) Strand=Plus/Minus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 |||||| ||||| || |||||||| | ||||| || || | || | || || Sbjct 229716 GTATTCGACAATTTCGGTACACAGGTTGCTGCATTTGATAGTTCCCAGGTTTTGTTGATT 229657 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 ||| || | |||||| ||||||||||| || ||| | ||| | || || || | || || Sbjct 229656 AGACTTGCGGTTACATGCATCCTTGTAAAGCATGAAGGGGTTCCCAGTTTCAGTTTGAGC 229597 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTAT-CTGCCTTCCG 155808 |||| ||| ||| || | | || || || | ||| || | ||||||| Sbjct 229596 TTCCAAAATGGCATACCACAGCTTTTGAGCCTTGATC-GTTTGACGTGCGCGGCCTTCCC 229538 Query 155809 ACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGC 155868 |||||||| | | |||| | | || ||||| | ||| | ||||| Sbjct 229537 GTTCATATTTTTCAAAAAGCGCCTCGAATTCGTCACCCCACACATCTTGTAAACCAGGAG 229478 Query 155869 ACTTATCGGGG-CAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACA 155927 ||| | || |||||||| ||||| ||| | ||||||| ||| || | | Sbjct 229477 -CTTCGCTAGGACAAAACAGGGACCATTCACCATTGGCTTCCACACGCTTCATGAAGAGA 229419 Query 155928 TCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTC 155987 ||| ||| | ||||||||| || || | ||| || || | |||| |||| Sbjct 229418 TCAGGGATCCAGAGAGCATAGAAGAGATCACGAGCCCGGATTTCGTCTTTGCCGACATTC 229359 Query 155988 TTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAA 156047 || || || || || || | ||||| ||| || || |||||||| || ||| Sbjct 229358 TTGCGGAGATCCAAAAAGGTGAAGACATCAGCATGCCAAGGTTCAAGATACATGGCGAAA 229299 Query 156048 CTACCATTCC---TCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCT 156104 |||| | | |||||||| ||||| ||||| |||||||| || |||||||||| Sbjct 229298 GCACCAGGTCGTTTGTTGCCACCTTGATCCACATAACGAGCAGTGTTGTTGAAGACACGG 229239 Query 156105 AGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAG 156164 |||||||||| |||||||||||| ||| || || || ||| | || |||| | Sbjct 229238 AGCATAGGAAGAATACCATTGGAGTAGCCGTTTGTACCAGCAATGTAGGAGCCAGTGGCA 229179 Query 156165 CGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCC 156224 || | || || || | || || || || |||| ||| || ||||| || || || Sbjct 229178 CGGATGTTGTGGATGTTGAGCCCGATCCCGCCTGCGGTTTTTGAGATTTGCGCACAGACC 229119 Query 156225 TTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAA 156284 || | || | | | || |||||||| || || || | ||| | || | |||| || Sbjct 229118 TTCAGTGTTTCGTAGATGCCTTCAATGGAGTCTTCCTTCATGGTGAGCAAGAAGCAAGAG 229059 Query 156285 CTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATAC 156344 | ||||| || || || || || ||||||| || || | || || | || ||| Sbjct 229058 GAGAGCTGAGGACGAGGAGTACCGGCATTGAATAAGGTTGGACTGGCGTGGGTGAAGTAC 228999 Query 156345 TTATTAGACAT 156355 || | ||||| Sbjct 228998 TTTTCCGACAT 228988 >seq2275 Length=1761326 Score = 93.3 bits (102), Expect = 1e-13 Identities = 155/223 (70%), Gaps = 7/223 (3%) Strand=Plus/Minus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 |||| ||||| || || || | ||||||||| | ||||||| | ||| ||| Sbjct 1159834 TTCCATGTATCAAGAAAAAGGCCGACTGGGCTTTCCGATGGATCAGTGGCAA-----CGA 1159780 Query 133497 GT--TTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGC 133554 | ||||| || || || || ||||||| || || || || || ||| |||||| Sbjct 1159779 ATCCTTTGCCGAACGACTTGTCGCCTTTGCTGCTGTTGAAGGTATCTTCTTCTCTGGTGC 1159720 Query 133555 GTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAA 133614 ||| |||||| |||||||| || ||||||||| | | ||||| || || || || Sbjct 1159719 ATTCGCCTCTATCTTTTGGCTCAAGAAGCGTGGTTTGATGCCTGGCTTGACCTTCTCCAA 1159660 Query 133615 CGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 |||||| || | ||||| | ||||||||||| |||||| Sbjct 1159659 CGAACTGATCAGCCGAGACGAAGGCCTTCACACCGACTTTGCC 1159617 >seq1141 Length=354663 Score = 91.5 bits (100), Expect = 4e-13 Identities = 112/150 (75%), Gaps = 5/150 (3%) Strand=Plus/Minus Query 301816 ATTTCTTCAATACGGGGAACACCACGGGTTACGTTAG-ACTTGGACGCAACACCAGCAAA 301874 ||||| | | ||| || ||||| | || ||||| ||||| || ||||||||| | Sbjct 129070 ATTTCCTTTAAACGAGGTACACCGAGAGTGACGTTCTTACTTG-AC---ACACCAGCATA 129015 Query 301875 GTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCAT 301934 ||||| ||||| || || | |||||||| || ||||||||| ||| || ||||| | Sbjct 129014 ATGGAAGGTATTGAGGGTCATTTGAGTAGCAGGTTCACCAATAGATTGAGCAGCAATGGT 128955 Query 301935 ACCAACCATTTCTCCTGGTGCTACAATAGA 301964 ||||||||||| || || || |||||||| Sbjct 128954 TCCAACCATTTCACCAGGCGCCACAATAGA 128925 >seq2288 Length=138545 Score = 89.7 bits (98), Expect = 2e-12 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 289027 TTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 || |||| ||| || ||||||||||| || || | || |||| || | | || || Sbjct 124457 TTGCCAATAGCGTCGATTTCGTCAATAAAGATAATGCAAGGAGCGTTGCTTTTGGCCGTT 124516 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 ||||| | || | ||||| || | |||| ||| ||| ||||||| ||||| || || Sbjct 124517 GCAAAGAGATCACGGACACGAGACGGACCAACACCGACAAACATTTCGACAAACTCCGAT 124576 Query 289147 GCGGATAC-TTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 | || || |||| ||||| ||| ||||||||| || ||| | |||| |||||| Sbjct 124577 CCAGAGACGCTGAA-GAATGGGACACCTGCTTCGCCAGCCGTCGCCTTTGCCAAAAGTGT 124635 Query 289206 CTTACCTGTTCCAGGTGGTCC 289226 ||||| || ||||| || || Sbjct 124636 TTTACCAGTACCAGGAGGACC 124656 >seq690 Length=324721 Score = 89.7 bits (98), Expect = 2e-12 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 353931 CCATACTTCGGGGCAGAGTGCAGAATAGAATTCCCGCTGATGAGATATAATAATCACACC 353990 ||||||||| | ||| ||| | |||| || || | |||| | ||| | ||||| Sbjct 82273 CCATACTTCAGTGCACAGTTCTTCGGAGAACTCACGGTTGTGAGTGACAATGACGACACC 82214 Query 353991 CCCAAGATAGCTCTTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATT 354050 |||| |||| |||| || || || || || || || | || || ||||| ||| |||| Sbjct 82213 CCCACCATAGTTCTTGATCGCGGTAGCCAGGGCGCCCAAGGATTCGCGGTCCAGGTAATT 82154 Query 354051 AGTAGGTTCGTCAAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTAC 354110 ||||||||||| || | || | |||||||| ||||||| || || | | || | Sbjct 82153 CGTAGGTTCGTCGAGCACCAGCATGTGCGGCTTGTTCCACATGGCAGCGCCAATCACCAG 82094 Query 354111 CTTAACCTTCTGTCCGCCTGATAG 354134 ||| ||||| || || || || || Sbjct 82093 CTTGACCTTTTGACCCCCCGACAG 82070 >seq4683 Length=165645 Score = 87.8 bits (96), Expect = 5e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 ||| |||| ||||||||| ||||| || || ||||||||||||| ||||| | | Sbjct 104707 TGGCCGATCGTCATACGAGAAGGAATGGCGTGAGGATTGATGATGAGATCGGGGGTGATG 104648 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAGTTCCCTTTTG 251957 || || || || ||||| | | ||| | || ||| || | |||||||| |||||||| Sbjct 104647 CCTTCGGCGGTAAAGGGGA-AGTCTTCTTGTCGATAGGTGATACCAATAGTGCCCTTTTG 104589 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||| |||||| ||||| ||||| || Sbjct 104588 CCCGTGGCGAGAAGCAAACTTGTCACCCAT 104559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471716937794906