Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20glauca_20[genbank_20GCA_5F900079185.1_202016-04-15] 5,338 sequences; 48,746,359 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3304 156 5e-32 seq2275 129 7e-24 seq4995 120 4e-21 seq319 113 6e-19 seq2224 102 1e-15 seq1090 93.3 5e-13 >seq3304 Length=726533 Score = 156 bits (172), Expect = 5e-32 Identities = 191/258 (74%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 || || || ||||| || |||| ||| ||||| || ||||| || | ||| ||||| || Sbjct 455129 TGATCCACATAGCGAGCAGTGTTGTTGAAGACTCGAAGCATAGGAAGGAGACCGTTTGAG 455188 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAG-CC 1630184 | |||||||||||| || | ||||| ||||| ||||| | ||||| | || || || Sbjct 455189 TGGCCGTTGGTGCCAGCAATGTAGGAGCCGGTAGCGCGAATGTTGTG-GATGCTGAGCCC 455247 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||| ||||| |||| ||||||||| | || ||||||||||| || ||||| || || || Sbjct 455248 GATACCGCCAGCCGTCTTGGAGATCTGTGCACACTGTTTGAGAGTATCGTAAATCCCTTC 455307 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 |||||| || | ||||| || | |||||| || || |||||| | | ||||| Sbjct 455308 GATCGAATCTTCTTTCATCGTCAGCAAAAAGCAGGAGGACAGTTGCGGTCGGGGAGTGCC 455367 Query 1630305 GGCGTTGAAGAGCGTGGG 1630322 |||| |||| | ||||| Sbjct 455368 GGCGCTGAATAAGGTGGG 455385 >seq2275 Length=1761326 Score = 129 bits (142), Expect = 7e-24 Identities = 160/217 (74%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 868718 TCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGGC 868777 || ||||||||||| ||||| | ||| ||||||| ||||| | ||| ||||||| Sbjct 1159348 TCAAAAAAGTTGGTTTTGCCTTGGAGAGAGATCAGATCCATAAAGTCGAAGGGGTTGGTG 1159407 Query 868778 GTCTTGTAGTGCTTTTC--GCATCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGA 868835 | ||||||||||| || | | |||||| | || ||||| |||||||| || |||| Sbjct 1159408 GATTTGTAGTGCTTCTCTTGACCCAGAGCGA--CCAGAAGGCGATCGGCGACGAATTCGA 1159465 Query 868836 TGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAGCGACTCGCTCA 868895 |||| |||||||| || || |||||| ||||| || || || || || | ||| ||| Sbjct 1159466 TGTATTGGCACATAAGCTTGGAGTTCATACCGATAAGGGCGACAGGAAGAGCGTCGGTCA 1159525 Query 868896 CAAACTCTTTCTCGATCTCGACGGCCTCGACGATGAT 868932 || || | ||||| ||||||| ||||| ||||| Sbjct 1159526 AGAATTCCTGTTCGATGGCGACGGCTTCGACAATGAT 1159562 Score = 113 bits (124), Expect = 6e-19 Identities = 140/192 (73%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||| || ||||||| ||||||| |||| | ||| ||||| | || |||||| Sbjct 1159636 CCTTCGTCTCGGCTGATCAGTTCGTTGGAGAAGGTCAAGCCAGGCATCAAACCACGCTTC 1159695 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||||||||| | | ||| || ||||| ||||| || || || || |||||| Sbjct 1159696 TTGAGCCAAAAGATAGAGGCGAATGCACCAGAGAAGAAGATACCTTCAACAGCAGCAAAG 1159755 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 ||| || || |||||||||| ||| ||| ||||||| | |||||| Sbjct 1159756 GCGACAAGTCGTTCGGCAAAGGATTCGTTGCC------ACTGATCCATCGGAAAGCCCAG 1159809 Query 869360 TCGGCCTTTTTC 869371 |||||||||||| Sbjct 1159810 TCGGCCTTTTTC 1159821 >seq4995 Length=460535 Score = 120 bits (132), Expect = 4e-21 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| ||| ||| ||| ||| || ||||||| ||| ||||| || || | || Sbjct 11181 GCTTGGCCAATTCACCGGGCAAGATAAGACGCACGGAGGTTTGGATTTCACGGGAAGAGA 11122 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| || |||| | ||| |||||| | ||||| || | | Sbjct 11121 TGGTGGAGCGCTTGTTGTAGGCAGCCAACTTGGAGGCTTCGGTGGCAATGCGTTCAAAGA 11062 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | |||||||| || ||||||| || ||||| | |||||||||||| || ||||| | Sbjct 11061 TATCGTTGACGAAGGAGTTCAAGATGGACATGGCCTTGTTGGAGATACCAGTATCGGGAT 11002 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||| ||||| | |||||||| ||| Sbjct 11001 GCACTTGCTTCAAGACCTTGTAAATG 10976 Score = 120 bits (132), Expect = 4e-21 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| ||| ||| ||| ||| || ||||||| ||| ||||| ||||| | || Sbjct 95506 GCTTGGCCAATTCACCGGGCAAGATAAGACGCACGGAGGTTTGGATTTCGCGGGAAGAGA 95447 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| || |||| | ||| |||||| | || || || | | Sbjct 95446 TGGTGGAGCGCTTGTTGTAGGCAGCCAACTTGGAGGCTTCGGTGGCAATACGTTCAAAGA 95387 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | |||||||| || ||||||| || ||||| | |||||||||||| || ||||| | Sbjct 95386 TATCGTTGACGAAGGAGTTCAAGATGGACATGGCCTTGTTGGAGATACCAGTATCGGGAT 95327 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||| ||||| | |||||||| ||| Sbjct 95326 GCACTTGCTTCAAGACCTTGTAAATG 95301 >seq319 Length=278629 Score = 113 bits (124), Expect = 6e-19 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 868718 TCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGGC 868777 ||||| ||||| |||||||| | || ||||||| ||||| | || || |||| Sbjct 176173 TCGAAGAAGTTTGTCTTGCCTTGAAGGGAGATCAGGTCCATAAAGTCAAAGGGATTGGAA 176232 Query 868778 GTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGATG 868837 | ||||||||||| || ||||| | | | | || || |||||||| || |||||| Sbjct 176233 GAGTTGTAGTGCTTGTCTTGACCGAGAGCCACCAAGAGACGATCGGCGACGAATTCGATG 176292 Query 868838 TACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAGCGACTCGCTCACA 868897 || || ||||| | | | ||||||||| ||||| ||||| || || | || ||| Sbjct 176293 TATTGACACATTAAGGTTGAGTTCATGCCAATGAGAGCCACAGGGAGAGCGTCCGTCAAG 176352 Query 868898 AACTCTTTCTCGATCTCGACGGCCTCGACGATGAT 868932 || |||| ||||||| | || || ||||| ||||| Sbjct 176353 AATTCTTGCTCGATCGCCACCGCTTCGACAATGAT 176387 Score = 109 bits (120), Expect = 7e-18 Identities = 139/192 (72%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||| | ||||| | ||||||| |||| | || ||||| ||||| || ||| Sbjct 176461 CCTTCGTCTCTGCTGATGAGTTCGTTGGAGAAGGTCAAACCAGGCATCAGGCCACGTTTC 176520 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||||||||||| | || |||||||| ||||| || || ||||| |||||| Sbjct 176521 TTGAGCCAAAAGATGGAGGCAAAGGCACCCGAGAAGAAGATACCTTCCACGGCAGCAAAG 176580 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 ||| || ||||| ||||||| ||| ||| |||||||| | ||||| Sbjct 176581 GCGACAAGACGCTCAGCAAAGGATTCGTTGCC------ACTGATCCACCGGAAAGCCCAA 176634 Query 869360 TCGGCCTTTTTC 869371 || ||||||||| Sbjct 176635 TCAGCCTTTTTC 176646 >seq2224 Length=1126757 Score = 102 bits (112), Expect = 1e-15 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| ||| || | | ||| || || |||| ||| ||||| || || | || Sbjct 998487 GCTTGGCCAATTCACCAGGTAAGATGAGACGGACGGAGGTTTGGATTTCACGAGAAGAGA 998428 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| || |||| | ||| || ||| | || || || | | Sbjct 998427 TGGTGGAGCGCTTGTTGTAGGCGGCCAACTTGGAGGCTTCAGTGGCAATACGTTCAAAGA 998368 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | |||||||| || ||||||| || ||||| | |||||||||||| || ||||||| Sbjct 998367 TATCGTTGACGAAGGAGTTCAAGATGGACATGGCCTTGTTGGAGATACCAGTATCGGGGT 998308 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | || ||||| | |||||||||||| Sbjct 998307 GGACTTGCTTCAAGACCTTGTAGATG 998282 >seq1090 Length=283134 Score = 93.3 bits (102), Expect = 5e-13 Identities = 200/299 (67%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 || || || || || || |||| ||| ||||| |||||||| || | | || ||||| Sbjct 229274 TGATCCACATAACGAGCAGTGTTGTTGAAGACACGGAGCATAGGAAGAATACCATTGGAG 229215 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | |||||| || || || | ||||| ||| | ||| || | ||||| | | ||| Sbjct 229214 TAGCCGTTTGTACCAGCAATGTAGGAGCCAGTGGCACGGATGTTGTGGATGTTGAGCCCG 229155 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || ||||| || | || ||||| |||| || || || || ||||||||||| || Sbjct 229154 ATCCCGCCTGCGGTTTTTGAGATTTGCGCACAGACCTTCAGTGTTTCGTAGATGCCTTCA 229095 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 || ||||| |||||||| | | ||||| || ||| || || | | || ||| Sbjct 229094 ATGGAGTCTTCCTTCATGGTGAGCAAGAAGCAAGAGGAGAGCTGAGGACGAGGAGTACCG 229035 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 || ||||| | || || | || |||||| ||| ||||||| | |||||| Sbjct 229034 GCATTGAATAAGGTTGGACTGGCGTGGGTGAAGTACTTTTCCGACATGAGATTGTAGGT 228976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106701138722146