Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20glauca_20[genbank_20GCA_5F900079185.1_202016-04-15] 5,338 sequences; 48,746,359 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq236 111 1e-19 seq3208 100 2e-16 seq3256 82.4 6e-11 >seq236 Length=318481 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| || | || ||||| || || ||| | ||| ||| | Sbjct 111979 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACAATCACCCTTGAAGTGGAATCCTCT 111920 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || || |||||| || ||||||||| | || |||||| Sbjct 111919 GACTCTATCGACAACGTCAAGCAAAAGATTCAAGATAAAGAAGGCATCCCTCCTGATCAA 111860 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | ||||| | ||| |||||||| ||||| |||| | | || | | || |||||| Sbjct 111859 CAACGTCTTATCTTTGCCGGTAAACAACTGGAAGATGGCCGCACGCTCTCTGACTACAAC 111800 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 || ||||||||||| || ||||| |||| Sbjct 111799 ATCCAAAAAGAATCCACCCTGCACTTGGT 111771 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 110337 CTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAACAAA 110396 || ||| | | || || || ||||| || ||||||||| | || ||||||||| Sbjct 112143 CTATCGACAACGTCAAGCAAAAGATCCAAGATAAAGAAGGCATCCCTCCTGATCAACAAC 112084 Query 110397 GACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAACATTC 110456 | ||||| | ||| |||||||| ||||| |||| | | || | |||| |||||||| | Sbjct 112083 GTCTTATCTTTGCTGGTAAACAACTGGAAGATGGCCGCACGCTCTCGGACTACAACATCC 112024 Query 110457 AAAAAGAATCTACGTTGCACATGGT 110481 |||||||||| || ||||| |||| Sbjct 112023 AAAAAGAATCCACCCTGCACTTGGT 111999 >seq3208 Length=262556 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| |||||| | || ||||| |||||||| | ||| ||| || Sbjct 84291 ATGCAAATCTTTGTAAAAACTCTTACTGGCAAGACCATTACATTGGAAGTGGAATCTTCT 84232 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || | ||| | | || ||||| ||||| || || |||||| | || || ||| Sbjct 84231 GACTCCATCGACAACGTCAAACAAAAGATCCAAGATAAGGAAGGCATCCCACCCGACCAA 84172 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | ||||| | ||| || |||||||| || |||| | | ||| | | || |||||| Sbjct 84171 CAGCGCCTTATCTTTGCCGGGAAACAGCTTGAAGATGGCCGCACACTCTCCGACTACAAC 84112 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 |||||||| ||||| || | || ||||| Sbjct 84111 ATTCAAAAGGAATCGACTCTTCATCTGGTG 84082 >seq3256 Length=796958 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || |||||||| || ||||| || || || ||||| ||||| || ||||| || || Sbjct 723171 AACATGCAAATCTTCGTCAAGACCTTGACTGGCAAGACCATCACTCTCGAAGTTGAATCT 723230 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| | ||| | | || || || |||||| || || ||||| | ||| || Sbjct 723231 TCCGACTCCATCGACAACGTCAAGCAAAAGATTCAAGATAAGGAAGGAATCCCCCCAGAC 723290 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || ||| |||| || | || || || || |||| |||| | | || | | || ||| Sbjct 723291 CAGCAACGACTCATCTTCGCCGGCAAGCAATTGGAAGATGGCCGCACTCTTTCTGACTAC 723350 Query 110450 AACATTCAAAAAGAATCTAC 110469 ||||||||||| |||||||| Sbjct 723351 AACATTCAAAAGGAATCTAC 723370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412814741815634