Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20glauca_20[genbank_20GCA_5F900079185.1_202016-04-15] 5,338 sequences; 48,746,359 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq4995 185 1e-40 seq3304 147 3e-29 seq2224 141 1e-27 seq2275 125 1e-22 seq1090 118 2e-20 seq319 104 4e-16 >seq4995 Length=460535 Score = 185 bits (204), Expect = 1e-40 Identities = 189/244 (77%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||||||||| || |||||||||||| |||||| ||| ||| ||| Sbjct 11220 TGTACTTGGTGACGGCCTTGGTACCTTCAGAGACGGCGTGCTTGGCCAATTCACCGGGCA 11161 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| || ||||||| ||| ||||| || |||| ||| ||| ||||||||| || Sbjct 11160 AGATAAGACGCACGGAGGTTTGGATTTCACGGGAAGAGATGGTGGAGCGCTTGTT-GTAG 11102 Query 1485590 GC-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || |||| | ||| |||||| | ||||| || | || |||||||| || |||||| Sbjct 11101 GCAGCCAACTTGGAGGCTTCGGTGGCAATGCGTTCAAAGATATCGTTGACGAAGGAGTTC 11042 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | ||| ||||| | ||||||||||| || ||||| ||||| ||||| | |||||| Sbjct 11041 AAGATGGACATGGCCTTGTTGGAGATACCAGTATCGGGATGCACTTGCTTCAAGACCTTG 10982 Query 1485709 TAAA 1485712 |||| Sbjct 10981 TAAA 10978 Score = 181 bits (200), Expect = 2e-39 Identities = 188/244 (77%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||||||||| || |||||||||||| |||||| ||| ||| ||| Sbjct 95545 TGTACTTGGTGACAGCCTTGGTACCTTCAGAGACGGCGTGCTTGGCCAATTCACCGGGCA 95486 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| || ||||||| ||| ||||| ||||||| ||| ||| ||||||||| || Sbjct 95485 AGATAAGACGCACGGAGGTTTGGATTTCGCGGGAAGAGATGGTGGAGCGCTTGTT-GTAG 95427 Query 1485590 GC-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || |||| | ||| |||||| | || || || | || |||||||| || |||||| Sbjct 95426 GCAGCCAACTTGGAGGCTTCGGTGGCAATACGTTCAAAGATATCGTTGACGAAGGAGTTC 95367 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | ||| ||||| | ||||||||||| || ||||| ||||| ||||| | |||||| Sbjct 95366 AAGATGGACATGGCCTTGTTGGAGATACCAGTATCGGGATGCACTTGCTTCAAGACCTTG 95307 Query 1485709 TAAA 1485712 |||| Sbjct 95306 TAAA 95303 >seq3304 Length=726533 Score = 147 bits (162), Expect = 3e-29 Identities = 189/258 (73%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 || || |||||||| || |||| ||| ||||| || ||||| || | || ||||| || Sbjct 455129 TGATCCACATAGCGAGCAGTGTTGTTGAAGACTCGAAGCATAGGAAGGAGACCGTTTGAG 455188 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAG-CC 2073659 | |||||||||||| || | ||||| ||| | ||||| | ||||| | || || || Sbjct 455189 TGGCCGTTGGTGCCAGCAATGTAGGAGCCGGTAGCGCGAATGTTGTG-GATGCTGAGCCC 455247 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| ||||| |||| ||||||||| | || |||| ||| || || ||||| || || || Sbjct 455248 GATACCGCCAGCCGTCTTGGAGATCTGTGCACACTGTTTGAGAGTATCGTAAATCCCTTC 455307 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 |||||| || | ||||| || || |||||| || || |||||| || | ||||| Sbjct 455308 GATCGAATCTTCTTTCATCGTCAGCAAAAAGCAGGAGGACAGTTGCGGTCGGGGAGTGCC 455367 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 ||| |||| | ||||| Sbjct 455368 GGCGCTGAATAAGGTGGG 455385 >seq2224 Length=1126757 Score = 141 bits (156), Expect = 1e-27 Identities = 199/278 (72%), Gaps = 11/278 (4%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||||||||| || || || |||||| |||||| ||| || | | Sbjct 998526 TGTACTTGGTGACAGCCTTGGTACCTTCAGACACAGCGTGCTTGGCCAATTCACCAGGTA 998467 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| || || |||| ||| ||||| || || | ||| ||| ||||||||| || Sbjct 998466 AGATGAGACGGACGGAGGTTTGGATTTCACGAGAAGAGATGGTGGAGCGCTTGTT-GTAG 998408 Query 1485590 GC-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || |||| | ||| || ||| | || || || | || |||||||| || |||||| Sbjct 998407 GCGGCCAACTTGGAGGCTTCAGTGGCAATACGTTCAAAGATATCGTTGACGAAGGAGTTC 998348 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | ||| ||||| | ||||||||||| || |||||||| || ||||| | |||||| Sbjct 998347 AAGATGGACATGGCCTTGTTGGAGATACCAGTATCGGGGTGGACTTGCTTCAAGACCTTG 998288 Query 1485709 TAAACAAAGGACGAGTACGAGGCATAGTTTTTCTTGCG 1485746 || | ||| ||||||||| || |||||| Sbjct 998287 TAGA---------TGTAGGAGGCATAGGATTCCTTGCG 998259 >seq2275 Length=1761326 Score = 125 bits (138), Expect = 1e-22 Identities = 159/217 (73%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 793926 TCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCC 793985 || ||||||||||| ||||| | ||| ||||||| ||||| | ||| ||||||| Sbjct 1159348 TCAAAAAAGTTGGTTTTGCCTTGGAGAGAGATCAGATCCATAAAGTCGAAGGGGTTGGTG 1159407 Query 793986 GTCAGGTAGTGCTTCTC--GCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAA 794043 | |||||||||||| | || |||||| | || ||||| |||||||||||||| | Sbjct 1159408 GATTTGTAGTGCTTCTCTTGACCCAGAGCGA--CCAGAAGGCGATCGGCGACGAATTCGA 1159465 Query 794044 TGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGA 794103 |||| |||||||| || || |||||| ||||| || || || || || | ||| | | Sbjct 1159466 TGTATTGGCACATAAGCTTGGAGTTCATACCGATAAGGGCGACAGGAAGAGCGTCGGTCA 1159525 Query 794104 CAAACTCTTTCTCGATCTCGACGGCCTCGATGATGAT 794140 || || | ||||| ||||||| |||| ||||| Sbjct 1159526 AGAATTCCTGTTCGATGGCGACGGCTTCGACAATGAT 1159562 Score = 95.1 bits (104), Expect = 2e-13 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| || ||||||| ||||||| ||| | ||| ||||| | || |||||| Sbjct 1159636 CCTTCGTCTCGGCTGATCAGTTCGTTGGAGAAGGTCAAGCCAGGCATCAAACCACGCTTC 1159695 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||||||||| | ||| || ||||| ||||| || || || || |||||| Sbjct 1159696 TTGAGCCAAAAGATAGAGGCGAATGCACCAGAGAAGAAGATACCTTCAACAGCAGCAAAG 1159755 Query 794461 CCGACGAGCCGCTCGGCAAA 794480 |||| || || |||||||| Sbjct 1159756 GCGACAAGTCGTTCGGCAAA 1159775 >seq1090 Length=283134 Score = 118 bits (130), Expect = 2e-20 Identities = 175/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 || || ||||| || || |||| ||| ||||| |||||||| || | || || ||||| Sbjct 229274 TGATCCACATAACGAGCAGTGTTGTTGAAGACACGGAGCATAGGAAGAATACCATTGGAG 229215 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 | |||||| || || || | ||||| ||| | ||| || | ||||| | | ||| Sbjct 229214 TAGCCGTTTGTACCAGCAATGTAGGAGCCAGTGGCACGGATGTTGTGGATGTTGAGCCCG 229155 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || ||||| || | || ||||| |||| || ||||| || ||||||||||| || Sbjct 229154 ATCCCGCCTGCGGTTTTTGAGATTTGCGCACAGACCTTCAGTGTTTCGTAGATGCCTTCA 229095 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 || ||||| |||||||| | || ||||| || ||| || || || | || ||| Sbjct 229094 ATGGAGTCTTCCTTCATGGTGAGCAAGAAGCAAGAGGAGAGCTGAGGACGAGGAGTACCG 229035 Query 2073781 GCATTGAA 2073788 |||||||| Sbjct 229034 GCATTGAA 229027 >seq319 Length=278629 Score = 104 bits (114), Expect = 4e-16 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 793926 TCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCC 793985 ||||| ||||| |||||||| | || ||||||| ||||| | || || |||| Sbjct 176173 TCGAAGAAGTTTGTCTTGCCTTGAAGGGAGATCAGGTCCATAAAGTCAAAGGGATTGGAA 176232 Query 793986 GTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATG 794045 | ||||||||| || ||||| | | | | || || |||||||||||||| ||| Sbjct 176233 GAGTTGTAGTGCTTGTCTTGACCGAGAGCCACCAAGAGACGATCGGCGACGAATTCGATG 176292 Query 794046 TACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACA 794105 || || ||||| | || | ||||||||| ||||| ||||| || || | || | | Sbjct 176293 TATTGACACATTAAGGTTGAGTTCATGCCAATGAGAGCCACAGGGAGAGCGTCCGTCAAG 176352 Query 794106 AACTCTTTCTCGATCTCGACGGCCTCGATGATGAT 794140 || |||| ||||||| | || || |||| ||||| Sbjct 176353 AATTCTTGCTCGATCGCCACCGCTTCGACAATGAT 176387 Score = 96.9 bits (106), Expect = 5e-14 Identities = 108/143 (76%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| | ||||| | ||||||| ||| | || ||||| ||||| || ||| Sbjct 176461 CCTTCGTCTCTGCTGATGAGTTCGTTGGAGAAGGTCAAACCAGGCATCAGGCCACGTTTC 176520 Query 794401 TTGAGCCAAAAGAT---GGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCA 794457 |||||||||||||| |||| || | |||||||| ||||| || || ||||| ||| Sbjct 176521 TTGAGCCAAAAGATGGAGGCAAAGGCA---CCCGAGAAGAAGATACCTTCCACGGCAGCA 176577 Query 794458 AAGCCGACGAGCCGCTCGGCAAA 794480 ||| |||| || ||||| ||||| Sbjct 176578 AAGGCGACAAGACGCTCAGCAAA 176600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915678572593382