Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20glauca_20[genbank_20GCA_5F900079185.1_202016-04-15] 5,338 sequences; 48,746,359 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq3208 170 4e-37 seq3256 161 2e-34 seq236 156 8e-33 seq2275 111 3e-19 seq197 104 5e-17 seq304 100 6e-16 >seq3208 Length=262556 Score = 170 bits (188), Expect = 4e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| ||||| || || ||||| || || ||||| || || || || |||||||| Sbjct 83837 CCACCTCGTAAACGGAGCACCAAGTGTAGGGTTGATTCCTTTTGGATGTTGTAATCAGAG 83896 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | ||| |||||||||||||| || |||||||| || | ||| || || ||||| Sbjct 83897 AGAGTGCGACCATCTTCTAGTTGTTTGCCTGCAAAGATGAGCCGTTGCTGGTCAGGAGGG 83956 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGG-TTCTAC 82762 || ||||| ||||||||||||||| || || || || || | || | ||| ||| || Sbjct 83957 ATGCCTTCTTTATCTTGAATCTTTTGCTTGACGTTGTCGATAGAGTC-TGAGGATTCCAC 84015 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| ||| || |||||||| ||||| ||||| || || |||||||| Sbjct 84016 TTCCAGAGTGATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 84063 Score = 131 bits (144), Expect = 3e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || | || ||||| ||||| || || || || || || | Sbjct 84063 TACCACCACGAAGACGAAGCACCAGATGAAGAGTCGATTCCTTTTGAATGTTGTAGTCGG 84122 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| || ||||| || |||||||| || | ||||| || || | Sbjct 84123 AGAGTGTGCGGCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGGCGCTGTTGGTCGGGTG 84182 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||||||||| |||||| ||| || || || || | ||| || ||| | Sbjct 84183 GGATGCCTTCCTTATCTTGGATCTTTTGTTTGACGTTGTCGATGGAGTCAGAAGATTCCA 84242 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 ||||||| || || |||||||| || | || |||||||| || ||||| || Sbjct 84243 CTTCCAATGTAATGGTCTTGCCAGTAAGAGTTTTTACAAAGATTTGCATAAT 84294 >seq3256 Length=796958 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| ||||| ||||||||||| || || || || || |||| Sbjct 723858 TACCACCACGGAGACGGAGAACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAG 723799 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || ||||| |||||||| ||||| ||||| | | ||| ||||| || | Sbjct 723798 AGAGAGTGCGGCCATCTTCCAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGGG 723739 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| |||||| || ||||| || || | ||| | ||| | Sbjct 723738 GGATACCTTCCTTGTCTTGGATCTTTTGCTTCACATTGTCGATAGAGTCAGAGGATTCCA 723679 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| ||| || |||||||| ||||| ||||| ||||| || ||||| Sbjct 723678 CTTCCAGAGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 723630 Score = 152 bits (168), Expect = 1e-31 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| || || ||||||||||| || || || || || |||| Sbjct 723630 TACCACCACGGAGACGGAGAACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAG 723571 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||| ||||| |||||||| ||||| ||||| | | |||||| ||||| | Sbjct 723570 AGAGCGTGCGACCATCTTCCAGTTGTTTGCCAGCGAAGATCAAGCGTTGTTGGTCTGGGG 723511 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| |||||| || || || || || | || | ||| | Sbjct 723510 GGATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTATCGATAGAGTCGGAGGATTCCA 723451 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || |||||||| ||||| ||||| ||||| || ||||| Sbjct 723450 CTTCCAAGGTAATGGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 723402 Score = 152 bits (168), Expect = 1e-31 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| ||||| |||||||||||||| || || || || |||| Sbjct 724314 TACCACCACGGAGACGGAGAACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAG 724255 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| | |||||| ||||| ||||| | | |||||| ||||| | Sbjct 724254 AGAGCGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGTTGGTCTGGGG 724195 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| |||||| || ||||| || || | || | ||| | Sbjct 724194 GGATACCTTCCTTGTCTTGGATCTTTTGCTTCACATTGTCGATAGAGTCCGAGGATTCCA 724135 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| ||| || ||||| || ||||| ||||| ||||| || ||||| Sbjct 724134 CTTCCAGAGTGATTGTCTTACCAGTCAAGGTCTTCACAAAGATTTGCAT 724086 Score = 143 bits (158), Expect = 5e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || | || ||||||||||| || || || || || |||| Sbjct 723402 TACCACCACGGAGACGGAGGACCAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAG 723343 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || ||||| | ||| || || || ||||| |||| ||| || ||||| | Sbjct 723342 AAAGAGTGCGGCCATCTTCCAATTGCTTGCCGGCGAAGATGAGTCGTTGCTGGTCTGGGG 723283 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||||||||||||||||||| || || || || || | || || ||| | Sbjct 723282 GGATTCCTTCCTTATCTTGAATCTTTTGCTTGACGTTGTCGATGGAGTCGGAAGATTCAA 723223 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | ||| || |||||||| ||||| ||||| || || || ||||| Sbjct 723222 CTTCGAGAGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 723174 Score = 138 bits (152), Expect = 2e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | || |||||||||||||| || || || || ||||| | | | | ||| Sbjct 724529 ACGTAGGACCAGATGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGACAAAGTACGACC 724470 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| || || || || |||||||| | | ||| || ||||| || || |||||||| Sbjct 724469 ATCTTCGAGCTGCTTCCCGGCAAAGATCAAACGTTGCTGGTCTGGGGGGATACCTTCCTT 724410 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| |||||| || || || || || | ||| | ||| ||||||||||| || Sbjct 724409 GTCTTGGATCTTTTGCTTGACGTTATCGATAGAGTCAGAGGATTCCACTTCCAAAGTAAT 724350 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| ||||| ||||| || ||||| Sbjct 724349 AGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 724314 Score = 134 bits (148), Expect = 3e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| | ||| ||||||||||| || || || || || |||| Sbjct 724086 TACCACCACGGAGACGGAGAACCAGGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAG 724027 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||| ||||| |||||||| ||||| ||||| | | |||||| ||||| | Sbjct 724026 AGAGCGTGCGACCATCTTCCAGTTGTTTGCCAGCGAAGATCAAGCGTTGTTGGTCTGGGG 723967 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||| ||||| |||||| || || || || || | ||| | ||| | Sbjct 723966 GGATTCCTTCCTTGTCTTGGATCTTTTGCTTCACGTTGTCGATAGAGTCAGAGGATTCCA 723907 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | || || || || || |||| ||||| || || || ||||| Sbjct 723906 CTTCAAGGGTGATTGTTTTACCAGTCAGGGTCTTGACGAAGATTTGCAT 723858 >seq236 Length=318481 Score = 156 bits (172), Expect = 8e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| || || ||||| ||||| || || || || ||||||| Sbjct 112563 TACCACCACGGAGACGGAGAACCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAG 112622 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| |||||||| || |||||||| || | |||||| ||||||| Sbjct 112623 AGAGGGTGCGGCCATCTTCCAGTTGTTTGCCGGCAAAGATGAGACGTTGTTGGTCTGGAG 112682 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| |||||||||||| || ||||| || || | ||| | ||| | Sbjct 112683 GAATACCTTCCTTGTCTTGAATCTTTTGCTTGACATTGTCGATGGAGTCAGAGGATTCCA 112742 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | || || ||||||||||| | |||||| || || || ||||| Sbjct 112743 CTTCAAGGGTGATTGTCTTGCCTGTAAGCGTCTTGACGAAGATTTGCAT 112791 Score = 150 bits (166), Expect = 4e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || |||||||| || |||||||| || || || || ||||| || | | || Sbjct 111764 ACGGAGGACCAAGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAGAGCGTGCGGCC 111823 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| |||||||| || |||||||| || | ||||||||| ||||| || ||||| || Sbjct 111824 ATCTTCCAGTTGTTTACCGGCAAAGATAAGACGTTGTTGATCAGGAGGGATGCCTTCTTT 111883 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||||||| || || || || || | ||| | ||| ||||| | || || Sbjct 111884 ATCTTGAATCTTTTGCTTGACGTTGTCGATAGAGTCAGAGGATTCCACTTCAAGGGTGAT 111943 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| ||||| ||||| || ||||| Sbjct 111944 TGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 111979 Score = 122 bits (134), Expect = 2e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || |||||||| || |||||||| || || || || || | Sbjct 111979 TACCACCACGGAGACGGAGGACCAAGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCCG 112038 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| |||||||| ||||||||||| || | ||||||||| |||| Sbjct 112039 AGAGCGTGCGGCCATCTTCCAGTTGTTTACCAGCAAAGATAAGACGTTGTTGATCAGGAG 112098 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| |||||||| |||||| || || || || || | ||| | ||| | Sbjct 112099 GGATGCCTTCTTTATCTTGGATCTTTTGCTTGACGTTGTCGATAGAGTCAGAGGATTCCA 112158 Query 82762 CTTCCAAAGTTATCGTCTTG 82781 |||| | || || |||||| Sbjct 112159 CTTCAAGGGTGATGGTCTTG 112178 >seq2275 Length=1761326 Score = 111 bits (122), Expect = 3e-19 Identities = 116/151 (77%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| ||||| ||||| || || || || || |||| Sbjct 759203 TACCACCACGGAGACGGAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAG 759262 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | | |||||||| ||||| || ||||||||||| || | ||| ||||| |||| Sbjct 759263 ACAAAGTACGGCCGTCTTCGAGTTGCTTGCCAGCAAAGATAAGACGTTGCTGATCAGGAG 759322 Query 82702 GTATTCCTTCCTTATCTTGAATC-TTTGCTT 82731 | || |||||||| ||||| ||| ||||||| Sbjct 759323 GGATACCTTCCTTGTCTTGGATCTTTTGCTT 759353 >seq197 Length=169696 Score = 104 bits (114), Expect = 5e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || || || || || ||||| || || || || || |||| Sbjct 118664 TACCACCACGGAGACGAAGGACCAAATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAG 118605 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || ||||| | ||| |||||||||||||| | | ||| ||||| || | Sbjct 118604 AGAGAGTGCGGCCATCTTCCAATTGCTTTCCAGCAAAGATCAAACGTTGCTGATCAGGGG 118545 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCG 82746 | || |||||||||||||| |||||| || ||||| || |||| Sbjct 118544 GGATACCTTCCTTATCTTGGATCTTTTGCTTGACATTGTCGATCG 118500 >seq304 Length=62727 Score = 100 bits (110), Expect = 6e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || || || ||||| ||||| || || || || || || | Sbjct 38821 TACCACCACGGAGACGGAGGACCAAATGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGG 38880 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | || ||||| ||||| || || |||||||| || | ||| ||||| |||| Sbjct 38881 ACAACGTACGGCCATCTTCGAGTTGCTTGCCGGCAAAGATAAGACGTTGCTGATCAGGAG 38940 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCG 82746 | || |||||||| |||||||||||| || ||||| || |||| Sbjct 38941 GAATACCTTCCTTGTCTTGAATCTTTTGCTTGACATTGTCGATCG 38985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981760049769582