Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20glauca_20[genbank_20GCA_5F900079185.1_202016-04-15] 5,338 sequences; 48,746,359 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq3304 132 1e-25 seq1090 114 3e-20 seq2275 105 2e-17 >seq3304 Length=726533 Score = 132 bits (146), Expect = 1e-25 Identities = 510/797 (64%), Gaps = 7/797 (1%) Strand=Plus/Minus Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 ||||| |||||||| | | | ||||| ||| | || || ||||| |||||||| | Sbjct 455499 GAACGACCTCAACATCTAATCATGCGTGTGGCGGTGGGGATCCATGGCCATGATATCGAC 455440 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACC 110483 |||| || ||| || | | | | ||||| | || || || | ||| ||| Sbjct 455439 GCTGCCATCGAAACCTACAACCTCATGTCTGAAAAGTACTTTACCCACGCCAGTCCCACC 455380 Query 110484 CTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAAC 110543 |||| | ||| || ||| || ||| || | || |||||| | || || || Sbjct 455379 TTATTCAGCGCCGGCACTCCCCGACCGCAACTGTCCTCCTGCTTTTTGCTGACGATGAAA 455320 Query 110544 GATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAAC 110603 || ||||| || ||||| ||||| ||| |||| ||| | ||| | || || || | Sbjct 455319 GAAGATTCGATCGAAGGGATTTACGATACTCTCAAACAGTGTGCACAGATCTCCAAGACG 455260 Query 110604 TCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACA 110663 |||| || || || | | | || | |||||| | | || | | || || Sbjct 455259 GCTGGCGGTATCGGGCTCAGCATCCACAACATTCGCGCTACCGGCTCCTACATTGCTGGC 455200 Query 110664 GCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAA 110723 | || || |||| || || |||| ||| | ||||||||||| ||||||| Sbjct 455199 ACCAACGGCCACTCAAACGGTCTCCTTCCTATGCTTCGAGTCTTCAACAACACTGCTCGC 455140 Query 110724 TATGTGAATCAAGGTGGTAAGA---GAAATGGCTCATTTGCTATCTATCTCGAACCTTGG 110780 |||||| |||||||||| || | | |||| | ||||| ||||| |||||||||||| Sbjct 455139 TATGTGGATCAAGGTGGCAACAAACGTCCTGGCGCCTTTGCAATCTACCTCGAACCTTGG 455080 Query 110781 CATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGA 110840 ||| | || | || ||| | || || || || ||| || || ||| | Sbjct 455079 CATGCTGACGTCTTCTCGTTCCTGGATCTGCGCAAGAATGTGGGCAAAGATGAAAGCCGG 455020 Query 110841 GCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAA 110900 || |||||| | |||||||| |||||||| | ||| | || ||| | ||||| | | Sbjct 455019 GCTCGTGATCTGTTTTATGCTCTGTGGATTCCTGATCTCTTTATGGAGCGTGTCGAGGCC 454960 Query 110901 AATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGA 110960 |||||| |||||| | | || ||| | ||||||| | ||||| | || Sbjct 454959 AATGGCGACTGGTCTTTGTTTTGCCCTGACGAAGCTCCTGGCTTGCAAGATGTCTGGGGC 454900 Query 110961 AAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGG-CAAGTTTCGCAAACAAAT 111019 | | |||| |||||| ||| | |||||| || |||| | | | |||||| Sbjct 454899 GATGCCTTTGTCTCCCTTTATGAACAGTATGAACAACAAGGTCGTGCTCGGCAAAC--TC 454842 Query 111020 TCCA-GCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTT 111078 || | |||||| | ||||||| ||| | ||| | ||| |||||||| | ||| | Sbjct 454841 TCAAGGCTCAAAAGCTTTGGTCGGCAATTATGGAAGCGCAAACGGAAACTGGGAATCCAT 454782 Query 111079 ATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTA 111138 || ||||| || || ||||| ||||| || ||| ||| |||| || || Sbjct 454781 TCATGTTGTACAAGGACGCCTGCAATCGTAAATCGAACCAACAGAACCTAGGCACCATCC 454722 Query 111139 AGTCTAGTAATTTGTGC 111155 | || || || ||||| Sbjct 454721 ACTCCAGCAACCTGTGC 454705 >seq1090 Length=283134 Score = 114 bits (126), Expect = 3e-20 Identities = 298/442 (67%), Gaps = 13/442 (3%) Strand=Plus/Plus Query 110686 TTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGA 110745 || |||| ||| | | ||||||||| ||||||| |||||| |||||||||| || | Sbjct 229226 TTCTTCCTATGCTCCGTGTCTTCAACAACACTGCTCGTTATGTGGATCAAGGTGGCAACA 229285 Query 110746 ---GAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCT 110802 || ||| | || || || ||||| |||||||||||| | ||| | || || | Sbjct 229286 AACGACCTGGTGCTTTCGCCATGTATCTTGAACCTTGGCATGCTGATGTCTTCACCTTTT 229345 Query 110803 TAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAA 110862 | || || || || ||| || || ||| | || |||||| | || ||||| Sbjct 229346 TGGATCTCCGCAAGAATGTCGGCAAAGACGAAATCCGGGCTCGTGATCTCTTCTATGCTC 229405 Query 110863 TGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGT 110922 | ||||| | ||| | |||||||| ||||| ||| ||||| ||||| || | | Sbjct 229406 TCTGGATCCCTGATCTCTTCATGAAGCGTGTGGAAGCCAATGGTGAATGGTCCCTGTTTT 229465 Query 110923 GTCCTCATCGTT-CTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTAC 110981 ||||| | || |||||||| || ||||| | || | || || || | |||| Sbjct 229466 GTCCT-AGCGAAGCTCCTGGTTTACAAGATGTGTGGGGTGACGAATTCGAGGCGCTTTTT 229524 Query 110982 GAAAAATATGAAAAAGAAGGCAAGTTTCG-CAAACAAATTCCA-GCTCAAGAACTTTGGT 111039 |||||||||||| |||||| || ||||| | || | |||||| | || |||| Sbjct 229525 GAAAAATATGAACGGGAAGGCCGCGCACGTCAAACGA--TCAAGGCTCAAAAGCTGTGGT 229582 Query 111040 TCAAAATCCTTGAATCACAAGTTGAAACT-GGAACTCCTTATATTTTGTATAAAGAT-CA 111097 || | ||| | ||| ||||||| ||||| |||| || | || || ||| || Sbjct 229583 ATGCCATTTTGGAAGCTCAAACTGAAACTGGGAACCCCTT-CATGCTTTACAAGGATGCA 229641 Query 111098 TATTAATCGCAAATCTAATCAA 111119 | ||| ||||| ||||||||| Sbjct 229642 T-GTAACCGCAAGTCTAATCAA 229662 >seq2275 Length=1761326 Score = 105 bits (116), Expect = 2e-17 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 131859 GACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCT 131918 ||||||| || |||||| |||||||||||| ||||| || ||||| ||| |||||| Sbjct 1159765 GACTTGTCGCCTTTGCTGCTGTTGAAGGTATCTTCTTCTCTGGTGCATTCGCCTCTATCT 1159706 Query 131919 TTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGA 131978 ||||||| ||||||||||| ||||||||||| | | || ||||| || | ||| Sbjct 1159705 TTTGGCTCAAGAAGCGTGGTTTGATGCCTGGCTTGACCTTCTCCAACGAACTGATCAGCC 1159646 Query 131979 GAGATGAAGCATTGCATACTGAATTTGC 132006 |||| |||| | || || || ||||| Sbjct 1159645 GAGACGAAGGCCTTCACACCGACTTTGC 1159618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186731630163818