Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20glauca_20[genbank_20GCA_5F900079185.1_202016-04-15] 5,338 sequences; 48,746,359 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3304 147 3e-29 seq4995 131 2e-24 seq2275 116 5e-20 seq2224 105 1e-16 seq319 95.1 2e-13 >seq3304 Length=726533 Score = 147 bits (162), Expect = 3e-29 Identities = 180/244 (74%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 259940 GCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCG 259999 |||||||| || || ||||| || || |||||| || || ||||| | |||||| Sbjct 455370 GCCGGCACTCCCCGACCGCAACTGTCCTCCTGCTTTTTGCTGACGATGAAAGAAGATTCG 455311 Query 260000 ATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGC 260059 ||||| || || || || || ||||| ||||| || | ||||||||| |||| ||||| Sbjct 455310 ATCGAAGGGATTTACGATACTCTCAAACAGTGTGCACAGATCTCCAAGACGGCTGGCGGT 455251 Query 260060 ATCGGTTTTGCCGCA--CACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACG 260117 ||||| | | ||| ||||| | ||||| | ||| ||||| | || |||||||||| Sbjct 455250 ATCGGGCT--CAGCATCCACAACATTCGCGCTACCGGCTCCTACATTGCTGGCACCAACG 455193 Query 260118 GCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCG 260177 |||| || ||||| || | || |||||||| || || ||| |||| || ||||| || | Sbjct 455192 GCCACTCAAACGGTCTCCTTCCTATGCTTCGAGTCTTCAACAACACTGCTCGCTATGTGG 455133 Query 260178 ACCA 260181 | || Sbjct 455132 ATCA 455129 >seq4995 Length=460535 Score = 131 bits (144), Expect = 2e-24 Identities = 169/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || |||||||| | ||||| ||||| ||| || | | ||| ||||||||| || Sbjct 10977 ATTTACAAGGTCTTGAAGCAAGTGCATCCCGATACTGGT-----ATC-TCCAACAAGGCC 11030 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||| ||||||| || |||||||| || | || ||||| | |||||| ||| Sbjct 11031 ATGTCCATCTTGAACTCCTTCGTCAACGATATCTTTGAACGCATTGCCACCGAAGCCTCC 11090 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||| || |||||||||| ||| ||| | || || ||||| ||| ||||| Sbjct 11091 AAGTTGGCTGCCTACAACAAGCGCTCCACCATCTCTTCCCGTGAAATCCAAACCTCCGTG 11150 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || ||| ||| ||| ||| |||||| |||||||||||| || || |||| Sbjct 11151 CGTCTTATCTTGCCCGGTGAATTGGCCAAGCACGCCGTCTCTGAAGGTACCA 11202 Score = 131 bits (144), Expect = 2e-24 Identities = 169/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || |||||||| | ||||| ||||| ||| || | | ||| ||||||||| || Sbjct 95302 ATTTACAAGGTCTTGAAGCAAGTGCATCCCGATACTGGT-----ATC-TCCAACAAGGCC 95355 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||| ||||||| || |||||||| || | || || || | |||||| ||| Sbjct 95356 ATGTCCATCTTGAACTCCTTCGTCAACGATATCTTTGAACGTATTGCCACCGAAGCCTCC 95415 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||| || |||||||||| ||| ||| | ||||| ||||| ||| ||||| Sbjct 95416 AAGTTGGCTGCCTACAACAAGCGCTCCACCATCTCTTCCCGCGAAATCCAAACCTCCGTG 95475 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || ||| ||| ||| ||| |||||| |||||||||||| || || |||| Sbjct 95476 CGTCTTATCTTGCCCGGTGAATTGGCCAAGCACGCCGTCTCTGAAGGTACCA 95527 >seq2275 Length=1761326 Score = 116 bits (128), Expect = 5e-20 Identities = 159/218 (73%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 ||||| ||||| ||||||| ||||| | || || | | ||| | || || || || Sbjct 1159562 ATCATTGTCGAAGCCGTCGCCATCGAACAGGAATTCTTGACCGACGCTCTTCCTGTCGCC 1159503 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || ||||| |||||| ||| ||| |||||||| ||||| ||||| |||||||| |||| Sbjct 1159502 CTTATCGGTATGAACTCCAA-GCTTATGTGCCAATACATCGAATTC-GTCGCCGATCGCC 1159445 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 | || | || || || | |||||||||||| | ||||||| ||| | ||| Sbjct 1159444 TTCTGGTCGCTCTGGG-TCAAGAGAAGCACTACAAATCCACCAACCCCTTCGACTTTATG 1159386 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGA 1456740 || ||||||| ||| | ||||| ||||||||||| || Sbjct 1159385 GATCTGATCTCTCTCCAAGGCAAAACCAACTTTTTTGA 1159348 Score = 93.3 bits (102), Expect = 6e-13 Identities = 138/192 (72%), Gaps = 9/192 (5%) Strand=Plus/Minus Query 1456122 GAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACAC-TTTGCCGA 1456180 |||||||||||||||||| | ||||||| ||| ||| | |||||||| Sbjct 1159821 GAAAAAGGCCGACTGGGCTTTCCGATGGATCAGT------GGCAACGAATCCTTTGCCGA 1159768 Query 1456181 GCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCAT 1456239 || || |||| |||||| || || || || ||||| ||||| || ||| | | || Sbjct 1159767 ACGACTTGTCGCCTTTGCTGCTGTTGAAGGTATCTTCTTCTCTGGTGCATTCGCCTCTAT 1159708 Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCA 1456299 |||||||||||||||||| || | ||||| || ||| ||| ||||||| | |||| Sbjct 1159707 CTTTTGGCTCAAGAAGCGTGGTTTGATGCCTGG-CTTGACCTTCTCCAACGAACTGATCA 1159649 Query 1456300 GTCGCGACGAAG 1456311 | || ||||||| Sbjct 1159648 GCCGAGACGAAG 1159637 >seq2224 Length=1126757 Score = 105 bits (116), Expect = 1e-16 Identities = 168/238 (71%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 724905 TCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAAC 724964 |||| ||||||||||| | ||||| || |||||| || ||| || ||||||| Sbjct 998277 TCCTACATCTACAAGGTCTTGAAGCAAGTCCACCCCGATAC---TGG--TAT-CTCCAAC 998330 Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| ||||||| ||| ||||||| || |||||||| || | || || || | ||| || Sbjct 998331 AAGGCCATGTCCATCTTGAACTCCTTCGTCAACGATATCTTTGAACGTATTGCCACTGAA 998390 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 ||| |||| || |||||||||| ||| ||| | || || ||||| ||| Sbjct 998391 GCCTCCAAGTTGGCCGCCTACAACAAGCGCTCCACCATCTCTTCTCGTGAAATCCAAACC 998450 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| || || ||| | | || ||| |||||| |||||| || || || || |||| Sbjct 998451 TCCGTCCGTCTCATCTTACCTGGTGAATTGGCCAAGCACGCTGTGTCTGAAGGTACCA 998508 >seq319 Length=278629 Score = 95.1 bits (104), Expect = 2e-13 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 1456172 CTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTT 1456230 |||||| ||||| || |||| |||||| || || || || ||||| |||||||| || Sbjct 176601 CTTTGCTGAGCGTCTTGTCGCCTTTGCTGCCGTGGAAGGTATCTTCTTCTCGGGTGCCTT 176542 Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACG 1456290 | ||||||||||||||||||| || ||||| ||||| ||| || ||| ||||| Sbjct 176541 TGCCTCCATCTTTTGGCTCAAGAAACGTGGCCTGATGCCTGGT-TTGACCTTCTCCAACG 176483 Query 1456291 AATTTATCAGTCGCGACGAAG 1456311 || | ||||| | ||||||| Sbjct 176482 AACTCATCAGCAGAGACGAAG 176462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177296340088756