Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20glauca_20[genbank_20GCA_5F900079185.1_202016-04-15] 5,338 sequences; 48,746,359 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq3256 104 2e-17 seq3208 102 7e-17 seq236 86.0 6e-12 >seq3256 Length=796958 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||| || | ||| |||||||| |||||||| || | Sbjct 723856 CCACCACGGAGACGGAGAACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAG 723797 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || ||||| || ||||| || || ||||| || ||||| || | || Sbjct 723796 AGAGTGCGGCCATCTTCCAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGGGGG 723737 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||| |||||||||||||| | | | | | ||| |||||||| Sbjct 723736 ATACCTTCCTTGTCTTGGATCTTTTGCTTCACATTGTCGATAGAGTCAGAGGATTCCACT 723677 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || |||||||| || ||||| || ||||| Sbjct 723676 TCCAGAGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 723630 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||| || | ||| || ||||| |||||||| || | Sbjct 724312 CCACCACGGAGACGGAGAACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAG 724253 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||| || ||||| || || ||||| || || ||||| | || Sbjct 724252 AGCGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGTTGTTGGTCTGGGGGG 724193 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||| |||||||||||||| | | | | | ||| |||||||| Sbjct 724192 ATACCTTCCTTGTCTTGGATCTTTTGCTTCACATTGTCGATAGAGTCCGAGGATTCCACT 724133 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || ||||| ||||| || |||||||| || ||||| Sbjct 724132 TCCAGAGTGATTGTCTTACCAGTCAAGGTCTTCACAAAGATTTGCAT 724086 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||| ||| | ||| || ||||| |||||||| || | | Sbjct 724540 CCACCACGGAGACGTAGGACCAGATGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAC 724481 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || || |||||||| || ||||| ||||| || |||||||| | || Sbjct 724480 AAAGTACGACCATCTTCGAGCTGCTTCCCGGCAAAGATCAAACGTTGCTGGTCTGGGGGG 724421 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||| |||||||||||| | | | | | ||| |||||||| Sbjct 724420 ATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTATCGATAGAGTCAGAGGATTCCACT 724361 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || || || || || |||| || || ||||| || ||||| Sbjct 724360 TCCAAAGTAATAGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 724314 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||||| | ||| |||||||| |||||||| || | Sbjct 723628 CCACCACGGAGACGGAGAACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAG 723569 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || ||||| || || || || || ||||| || || ||||| | || Sbjct 723568 AGCGTGCGACCATCTTCCAGTTGTTTGCCAGCGAAGATCAAGCGTTGTTGGTCTGGGGGG 723509 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||| |||||||||||| | | | | | |||| |||||||| Sbjct 723508 ATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTATCGATAGAGTCGGAGGATTCCACT 723449 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || || || || || ||||| || || ||||| || ||||| Sbjct 723448 TCCAAGGTAATGGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 723402 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 |||||||| |||||||| || | | || || | || ||||| || || || || || Sbjct 724048 TCCTTTTGGATGTTGTAGTCAGAGAGCGTGCGACCATCTTCCAGTTGTTTGCCAGCGAAG 723989 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| || || ||||| | || | | |||||||| |||||||||||||| ||| Sbjct 723988 ATCAAGCGTTGTTGGTCTGGGGGGATTCCTTCCTTGTCTTGGATCTTTTGCTTCA-CGTT 723930 Query 35666 G-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | | ||| |||||||| || | ||||| |||||||| |||| || || || Sbjct 723929 GTCGATAGAGTCAGAGGATTCCACTTCAAGGGTGATTGTTTTACCAGTCAGGGTCTTGAC 723870 Query 35725 AAATATCTGCAT 35736 || || ||||| Sbjct 723869 GAAGATTTGCAT 723858 >seq3208 Length=262556 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| ||||| | | |||||| |||| || |||||||| ||||||||||| | Sbjct 83837 CCACCTCGTAAACGGAGCACCAAGTGTAGGGTTGATTCCTTTTGGATGTTGTAATCAGAG 83896 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || || || || || || ||||| || | ||| |||||||| | ||| Sbjct 83897 AGAGTGCGACCATCTTCTAGTTGTTTGCCTGCAAAGATGAGCCGTTGCTGGTCAGGAGGG 83956 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | || || || || ||||||||||| | |||| | | | ||| |||||||| Sbjct 83957 ATGCCTTCTTTATCTTGAATCTTTTGCTTGA-CGTTGTCGATAGAGTCTGAGGATTCCAC 84015 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || |||||||| || || || |||||||| Sbjct 84016 TTCCAGAGTGATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 84063 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||| ||| | || ||||||||||||||||| |||| Sbjct 84065 CCACCACGAAGACGAAGCACCAGATGAAGAGTCGATTCCTTTTGAATGTTGTAGTCGGAG 84124 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || || ||||| || || ||||| || | ||||| ||||| | || Sbjct 84125 AGTGTGCGGCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGGCGCTGTTGGTCGGGTGGG 84184 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | || ||||| || ||||||||| || | |||| | | | ||| |||||||| Sbjct 84185 ATGCCTTCCTTATCTTGGATCTTTTGTTTGA-CGTTGTCGATGGAGTCAGAAGATTCCAC 84243 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || || || || || || | |||||| ||||| || ||||| Sbjct 84244 TTCCAATGTAATGGTCTTGCCAGTAAGAGTTTTTACAAAGATTTGCAT 84291 >seq236 Length=318481 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||||| | || |||||||||||||||||||| | Sbjct 112565 CCACCACGGAGACGGAGAACCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAG 112624 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || ||||| || || || ||||| || | || || ||||| | |||| Sbjct 112625 AGGGTGCGGCCATCTTCCAGTTGTTTGCCGGCAAAGATGAGACGTTGTTGGTCTGGAGGA 112684 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||| ||||||||||| | | | | | | ||| |||||||| Sbjct 112685 ATACCTTCCTTGTCTTGAATCTTTTGCTTGACATTGTCGATGGAGTCAGAGGATTCCACT 112744 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || || || | || || || || || ||||| Sbjct 112745 TCAAGGGTGATTGTCTTGCCTGTAAGCGTCTTGACGAAGATTTGCAT 112791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450763520797040