Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20glauca_20[genbank_20GCA_5F900079185.1_202016-04-15] 5,338 sequences; 48,746,359 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1090 223 4e-53 seq2869 98.7 1e-15 seq2275 98.7 1e-15 seq3304 86.0 8e-12 >seq1090 Length=283134 Score = 223 bits (246), Expect = 4e-53 Identities = 1102/1728 (64%), Gaps = 40/1728 (2%) Strand=Plus/Minus Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAG 110422 ||||| || ||||| ||||||||||| || | ||||||| | || | |||||| | Sbjct 230630 CGGAGGTAATACATGCCGGTCTTGAGCCCCTTTTTCCATCCATAAAAGTGCATACTGGTC 230571 Query 110423 AGCTTGGACATCGTT--GGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGA 110480 |||||| || ||| |||| | ||||||| |||| |||||||||||||| || | Sbjct 230570 AGCTTGC-CAAAGTTAGGGACAC-CGATGAAGATATTCAAGCTTTGACTTTGGTCGATAA 230513 Query 110481 AGCGCCCCCGTTGTGCCGCCATATCAATGACA-TCCTTCATCTTAATTTCCCAAACTGTG 110539 || |||||| | || ||||||||||||| | | | | |||||||| || || Sbjct 230512 AGGCCCCCCGATCAGCGGCCATATCAATGAGTGTGCGTTG-CGAGATTTCCCATACCGTC 230454 Query 110540 CGATAGAGATTCTTGATATCATCTGGGATAT-CTGAGATATTCTGGATGGAACCCCCCGC 110598 || | |||| || ||| ||||| | ||| ||| ||||| | || || | | Sbjct 230453 TTGTACATTGCTTTGAGATGATCCGGGATGTTCTG-GATGTTCTGTACCGAGCCACTGTC 230395 Query 110599 CTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGAC 110658 || ||| | | ||| || || | | ||||| || | | | ||| |||| Sbjct 230394 AGACATGATGCGGTTCTTGATGTCTTCGTTCCAGATGCCGAGTTCGACCAAGTCTTTGAG 230335 Query 110659 GAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGT 110718 ||| |||||| || || ||||| |||||| | | ||||| ||| | Sbjct 230334 GAGCCAAGGGTTGACGATTTGGAATTCACCAGCGAGGACACGACGGGTGTAGAGGTTGGA 230275 Query 110719 TGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCAT 110778 ||||| ||||| |||||||| || || | |||||| | |||||| ||||| ||||| Sbjct 230274 GGTGTAAGGTTCGAAGCATTCGTTGAAGCCGAGGATTTGCGAGGTGGAAGCTGTGGGCAT 230215 Query 110779 TGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATC 110838 ||||| | | || ||| || | ||| | | |||| | || | | | | Sbjct 230214 AGGTGCAACAAGCAGGGAGTTGCGGACACCGTGTTGGCTGATCTTGGCTTTCAAAGCGGC 230155 Query 110839 CCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGG 110896 |||||| | || | | ||| | || |||||||||| | || || || | | Sbjct 230154 CCAGTCCCAAA-GATCGGTAGGTGTGACAC-CCCACATGTCGTATTGGAGGTTGCCCTTG 230097 Query 110897 GACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTC 110956 || | ||| || | | |||||||| | ||| | || ||||||||| || | Sbjct 230096 GAGACAGGACTGCCTTGGTATGTTTCATAAGCACCGTCTTGTTGAGCCAATTCGCATGAC 230037 Query 110957 GCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCA 111016 || |||| | ||| | || |||||||||||||| | || | | ||||| || Sbjct 230036 GCTTCCAAAGCTGCATAGTAGATGGTTTCAAAGATCTGTTGGTTGAGTTTTTTGGCCTCC 229977 Query 111017 TCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAA 111076 || || ||||| | |||||| | || || |||| || | ||||| ||||| | | Sbjct 229976 TCGGATTCAAAGGGGTAGCGCATGAGCATGAAGGCATCAGCCAAGCCTTGGACACCGAGA 229917 Query 111077 CCAATAGGTCTGTGTCGCATATTAGA-CTTTCGCGCAGTCTCAACGGGATAAAAATTTCT 111135 ||||| || | || || | || || | ||| || | | || || ||| |||| | Sbjct 229916 CCAATGGGGCGATGGCGTTTGTTGGATCGTTCA-GCTTCCACCACAGGGTAATAATTGAT 229858 Query 111136 GTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATA 111195 ||| |||| ||| | ||| ||||| | | || |||| || || || || | | Sbjct 229857 GTCGATGATCTTGTTCAAATTCTTGGTGATGACTTTGGTGACTTGATACAGCTTCTTGAA 229798 Query 111196 ATCAAAAGTGCGAGTCTCTTCATTGAC---ATACTTTGGAAGGGCGATTGATGCCAAATT 111252 ||| || | || || ||||| |||| || || ||||| || | ||| Sbjct 229797 GTCATAAT----ATTCCCTG--TTGACCACATACGAAGGCAGAGCGATACTGGCGAGATT 229744 Query 111253 GCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACT 111312 || || || ||||| | ||| || | |||||| ||||| | |||| | Sbjct 229743 ACAGACGGCGACTTCATCAGGGCTAGAGTATTCGACAATTTCGGTACACAGGTTGCTGCA 229684 Query 111313 CTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCAT 111372 || || || |||| || | ||| ||| ||| ||| || ||||||||||| ||||| Sbjct 229683 TTTGATAGTTCCCAGGTTTTGTTGATTAGACTTGCGGTTACATGCATCCTTGTAAAGCAT 229624 Query 111373 GTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTG 111431 | |||| |||| || || || || | || | ||| || | ||| | | | | | || Sbjct 229623 GAAGGGGTTCCCAGTTTCAGTTTGAGCTTCCAAAATGGCATACCACAGCTTTTGAGCCTT 229564 Query 111432 GTACAATGG-CGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCC 111490 | | | | ||| || || || ||| || || ||| | || || || || || Sbjct 229563 GATCGTTTGACGT--GCGCGGCCTTCCCGTTCATATTTTTCAAAAAGCGCCTCGAATTCG 229506 Query 111491 TCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCA 111550 |||||| | | || | ||| || || | | ||||| || || ||||||| |||| Sbjct 229505 TCACCCCACACATCTTGTAAACCAGGAGCTTCGCTAGGACAAAACAGGGACCATTCACCA 229446 Query 111551 CCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA 111610 | || || ||||||||||| || || || ||||| || | | |||||||| | | Sbjct 229445 TTGGCTTCCACACGCTTCATGAAGAGATCAGGGATCCAGAGAGCATAGAAGAGATCACGA 229386 Query 111611 CACCGAG---CCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCC 111667 ||| | |||| | | | | ||| || | || | || | || ||| Sbjct 229385 GCCCGGATTTCGTCTTTGCCGACATTCTTG---CGGAGATCCAAAAAGGTGAAGACATCA 229329 Query 111668 GCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATT 111723 || ||||| || |||||||| | |||| || || | || | ||| | |||||| Sbjct 229328 GCATGCCAAGGTTCAAGATACATGGCGAAAGCACCAGGTCGTTTGTTGCC-ACCTTGATC 229270 Query 111724 TACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACC 111783 ||||| || || ||| ||| || || || ||||| |||| |||||||| || | || Sbjct 229269 CACATAACGAGCAGTGTTGTTGAAGACACGGAGCATAGGAAGAATACCATTGGAGTAGCC 229210 Query 111784 ATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACC 111843 ||||| || ||| || | |||| | | | ||||||| | ||| || || Sbjct 229209 GTTTGTACCAGCAATGTAGGAGCCAGTGGCACGGATGTTGTGGATGTTGAGCCCGATCCC 229150 Query 111844 CCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGA 111903 || || ||||||||||||||||| || | || ||| | ||||| || | || || Sbjct 229149 GCCTGCGGTTTTTGAGATTTGCGCACAGACCTTCAGTGTTTCGTAGATGCCTTCAATGGA 229090 Query 111904 GTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATT 111963 ||| ||||| ||| || | ||||||| ||| | ||| || | || ||||| ||||| Sbjct 229089 GTCTTCCTTCATGGTGAGCAAGAAGCAAGAGGAGAGCTGAGGACGAGGAGTACCGGCATT 229030 Query 111964 GAAGAGGGTTGGTGTTGCGTGAATGAACATAC-CTTGGGACATCTTGTCGTATGTCTCCA 112022 ||| | |||||| | ||||| |||| ||| || ||||| | ||| || || | Sbjct 229029 GAATAAGGTTGGACTGGCGTGGGTGAA-GTACTTTTCCGACATGAGATTGTAGGTTTCGA 228971 Query 112023 AGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGA 112070 | || || || ||||| || || || || | || || ||||||| Sbjct 228970 TAGCCGAGTCGATATCTTCGCCATGAATACCCACGGCCACACGCATGA 228923 >seq2869 Length=18354 Score = 98.7 bits (108), Expect = 1e-15 Identities = 261/396 (66%), Gaps = 2/396 (1%) Strand=Plus/Minus Query 9160 TCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAACGAGG 9219 |||| ||||| || |||| || ||| || || || |||| | || ||||| || Sbjct 10280 TCTACCAAGCGTCGACCTCTGAACTGTACGGCAAAGTAGTGGAGACCCCCCAAAAGGAAA 10221 Query 9220 AGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGGCTCG 9279 || ||||||||||| ||||| || || || | ||| | | | ||| ||| Sbjct 10220 CCACCCCCTTCTACCCCCGCTCTCCATATGGTGTGGCCAAGCTCTATGGTTACTGGATCG 10161 Query 9280 TCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATG 9339 || || || || || |||||| ||| ||| || ||| |||||||||||||||| Sbjct 10160 TCGTGAACTATCGTGAATCTTACAACATGTATGCCTGTAACGGTATCCTCTTCAACCATG 10101 Query 9340 AATCACCGAGACGAGGTGCAGACTTTGTGACCATGAAGATTACCGAGGGTATCAAACAAA 9399 |||| || | || || |||||| ||| ||||| | | | | | | Sbjct 10100 AATCCCCTCGTCGTGGCCGTACCTTTGTCACCCGCAAGATCTCTCGTGCTGTGGCGGATA 10041 Query 9400 TC-ATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATTGG 9458 || || || | ||| ||| | || | | || ||||| | || || | |||||| Sbjct 10040 TCCATCTCGGTCGTCAAG-AGTGCCTTTATCTCGGCAACATCGATGCCAAGCGTGATTGG 9982 Query 9459 GGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCCGAC 9518 ||||| || ||||||||| |||| ||||||||| ||| | |||||||| || | ||| Sbjct 9981 GGTCATGCTCGGGACTATGTGGAAGGTATGTGGCTGATGTTGCAACAAGATCAACCTGAC 9922 Query 9519 GAATATGTAGTAGCAACGGGTGAGACCCATTCAGTG 9554 || | ||| | || || ||||| |||||| | ||| Sbjct 9921 GACTTTGTCTTGGCTACCGGTGAAACCCATACTGTG 9886 >seq2275 Length=1761326 Score = 98.7 bits (108), Expect = 1e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||| || || || |||||| || ||||| || |||||| | || Sbjct 1159617 GGCAAAGTCGGTGTGAAGGCCTTCGTCTCGGCTGATCAGTTCGTTGGAGAAGGTCAAGCC 1159676 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||| | ||| |||||||| | |||| | |||| | ||||| || ||||||||||| Sbjct 1159677 AGGCATCAAACCACGCTTCTTGAGCCAAAAGATAGAGGCGAATGCACCAGAGAAGAAGAT 1159736 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 ||| || ||| ||||| || | ||| |||||||| ||||| Sbjct 1159737 ACCTTCAACAGCAGCAAAGGCGACAAGTCGTTCGGCAAAGGA 1159778 >seq3304 Length=726533 Score = 86.0 bits (94), Expect = 8e-12 Identities = 151/214 (71%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 110358 TTGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAG 110417 ||||||| | |||||||||||||||||||||||| | |||||| || || | ||||| | Sbjct 123333 TTGATCGTAAATAGTACATCCCGGTCTTGAGTCCCTTTTTCCAAGCATAGAAGTGCATTG 123392 Query 110418 AAGAGAGCTTGGACATCGTTGGACTTTCC-ATGAAGAGGTTCATACTTTGACTTTGGTCA 110476 | | |||||| | | | | | | | || ||||||| ||||| ||| |||||| Sbjct 123393 AGGTGAGCTT-GCCGTAGGTAGGTTCGCCTGTGAAGAGATTCATGGATTGCGATTGGTCG 123451 Query 110477 ATGAAGCGCCCCCGTTGTGCCGCCATATCAATGA-CATCCTTCATCTTA-ATTTCCCAAA 110534 || ||| | || | || ||||| || |||| | || | | | | |||||||| | Sbjct 123452 ATAAAGGCAGCACGGTCGGCGGCCATGTCGATGATGACCCGT--TGTGAGATTTCCCAGA 123509 Query 110535 CTGTGCGATAGAGATTCTTGATATCATCTGGGAT 110568 |||| ||||| ||||| |||||| ||||| Sbjct 123510 CTGTCTTGTAGAGTGCCTTGAGATCATCAGGGAT 123543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627990094564800