Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20glauca_20[genbank_20GCA_5F900079185.1_202016-04-15] 5,338 sequences; 48,746,359 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq3208 120 2e-22 seq236 120 2e-22 seq3256 96.9 2e-15 seq2275 91.5 9e-14 seq304 91.5 9e-14 >seq3208 Length=262556 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| ||| ||||| |||||||||||||| || || || Sbjct 84065 CCACCACGAAGACGAAGCACCAGATGAAGAGTCGATTCCTTTTGAATGTTGTAGTCGGAG 84124 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | |||||||| ||||| |||||||| || | ||||||||||| || || Sbjct 84125 AGTGTGCGGCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGGCGCTGTTGGTCGGGTGGG 84184 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||| ||| ||||||||| ||| ||| | || | ||| ||||| Sbjct 84185 ATGCCTTCCTTATCTTGGATCTTTTG-TTTGACGTTGTCGATGGAGTCAGAAGATTCCAC 84243 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || || || || | ||||| ||||| || ||||| Sbjct 84244 TTCCAATGTAATGGTCTTGCCAGTAAGAGTTTTTACAAAGATTTGCAT 84291 >seq236 Length=318481 Score = 120 bits (132), Expect = 2e-22 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||| |||||| |||||||||||||| ||||| || || || || Sbjct 112574 AGACGGAGAACCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAGAGGGTGCGG 112633 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| |||||||| |||||||| || | ||| |||||||| || || | || ||| Sbjct 112634 CCATCTTCCAGTTGTTTGCCGGCAAAGATGAGACGTTGTTGGTCTGGAGGAATACCTTCC 112693 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668 |||||| |||||||| || | || | ||| | |||||||| | ||| Sbjct 112694 TTGTCTTGAATCTTTTGCTTGACATTGTCGATGGAGTCAGAGGATTCCACTTCAAGGGTG 112753 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 || || || || || | ||| || || || || |||||| |||| Sbjct 112754 ATTGTCTTGCCTGTAAGCGTCTTGACGAAGATTTGCATGGTGAT 112797 Score = 86.0 bits (94), Expect = 4e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || || ||| || ||||| ||||| || || || || || || Sbjct 111762 AGACGGAGGACCAAGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAGAGCGTGCGG 111821 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| ||||||||||||||||| || | ||| ||||| || || || | || || Sbjct 111822 CCATCTTCCAGTTGTTTACCGGCAAAGATAAGACGTTGTTGATCAGGAGGGATGCCTTCT 111881 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| |||||||| || ||| | || | ||| | |||||||| | ||| Sbjct 111882 TTATCTTGAATCTTTTG-CTTGACGTTGTCGATAGAGTCAGAGGATTCCACTTCAAGGGT 111940 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || || ||||| || ||||| Sbjct 111941 GATTGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 111979 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || || ||| || ||||| ||||| || || || || || || Sbjct 111990 AGACGGAGGACCAAGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCCGAGAGCGTGCGG 112049 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| ||||||||||| ||||| || | ||| ||||| || || || | || || Sbjct 112050 CCATCTTCCAGTTGTTTACCAGCAAAGATAAGACGTTGTTGATCAGGAGGGATGCCTTCT 112109 Query 34609 TTGTCTGTGATCTTTTGTTT 34628 || ||| ||||||||| || Sbjct 112110 TTATCTTGGATCTTTTGCTT 112129 >seq3256 Length=796958 Score = 96.9 bits (106), Expect = 2e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || ||||| |||||||| ||||| || || || || || || Sbjct 723847 AGACGGAGAACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGG 723788 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| ||||||||||| || || || ||||| || || || || || | || ||| Sbjct 723787 CCATCTTCCAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGGGGGATACCTTCC 723728 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668 |||||| ||||||||| || | || | ||| | |||||||||| || Sbjct 723727 TTGTCTTGGATCTTTTGCTTCACATTGTCGATAGAGTCAGAGGATTCCACTTCCAGAGTG 723668 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || || || ||||| || ||||| Sbjct 723667 ATTGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 723630 Score = 86.0 bits (94), Expect = 4e-12 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| ||| ||||| |||||||||||||| || || ||||| || || Sbjct 723391 AGACGGAGGACCAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAAAGAGTGCGG 723332 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||| || ||||| || || | || || ||||| || || | ||| ||| Sbjct 723331 CCATCTTCCAATTGCTTGCCGGCGAAGATGAGTCGTTGCTGGTCTGGGGGGATTCCTTCC 723272 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| |||||||| || ||| | || | ||| || ||||| | || Sbjct 723271 TTATCTTGAATCTTTTG-CTTGACGTTGTCGATGGAGTCGGAAGATTCAACTTCGAGAGT 723213 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATT 34713 || || || || || || || || || || || |||||||||||| Sbjct 723212 GATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCATGTTGATT 723167 >seq2275 Length=1761326 Score = 91.5 bits (100), Expect = 9e-14 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || |||||| |||||||||||||| || || || | || || Sbjct 759214 AGACGGAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGACAAAGTACGG 759273 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| ||||| || || ||||| || | ||| || || || || || | || ||| Sbjct 759274 CCGTCTTCGAGTTGCTTGCCAGCAAAGATAAGACGTTGCTGATCAGGAGGGATACCTTCC 759333 Query 34609 TTGTCTGTGATCTTTTGTTT 34628 |||||| ||||||||| || Sbjct 759334 TTGTCTTGGATCTTTTGCTT 759353 >seq304 Length=62727 Score = 91.5 bits (100), Expect = 9e-14 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||||||||||||| |||||||| ||||| || || || | || || Sbjct 38832 AGACGGAGGACCAAATGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGACAACGTACGG 38891 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| ||||| || |||||||| || | ||| || || || || || | || ||| Sbjct 38892 CCATCTTCGAGTTGCTTGCCGGCAAAGATAAGACGTTGCTGATCAGGAGGAATACCTTCC 38951 Query 34609 TTGTCTGTGATCTTTTGTTT 34628 |||||| |||||||| || Sbjct 38952 TTGTCTTGAATCTTTTGCTT 38971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314709124675754