Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20glauca_20[genbank_20GCA_5F900079185.1_202016-04-15] 5,338 sequences; 48,746,359 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq236 170 2e-37 seq3208 168 6e-37 seq3256 147 2e-30 seq304 113 4e-20 seq197 109 5e-19 seq2275 100 2e-16 >seq236 Length=318481 Score = 170 bits (188), Expect = 2e-37 Identities = 177/232 (76%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 ||||||| || || || || || || || |||||| | || || |||||||||||| | | Sbjct 112793 CCATGCAAATCTTCGTCAAGACGCTTACAGGCAAGACAATCACCCTTGAAGTGGAATCCT 112734 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||||| || || | ||||| ||||| ||||||||||| ||||| || || || || | Sbjct 112733 CTGACTCCATCGACAATGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCAGACC 112674 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 |||| ||| | || | |||||||||||| ||||||| | ||| | || ||||||| Sbjct 112673 AACAACGTCTCATCTTTGCCGGCAAACAACTGGAAGATGGCCGCACCCTCTCTGATTACA 112614 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||||| || || | ||||||||| | ||| | || ||||| || Sbjct 112613 ACATTCAAAAGGAATCCACTCTTCATTTGGTTCTCCGTCTCCGTGGTGGTAT 112562 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || ||||| |||||| | || || |||||||||||| | || Sbjct 111979 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACAATCACCCTTGAAGTGGAATCCTCT 111920 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| || || | ||||| ||||| |||||||| ||||||||||| || || |||||| Sbjct 111919 GACTCTATCGACAACGTCAAGCAAAAGATTCAAGATAAAGAAGGCATCCCTCCTGATCAA 111860 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||||| |||||| ||||||| | || | || || |||||| Sbjct 111859 CAACGTCTTATCTTTGCCGGTAAACAACTGGAAGATGGCCGCACGCTCTCTGACTACAAC 111800 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||| || || ||| | || ||||| | ||| | || ||||| Sbjct 111799 ATCCAAAAAGAATCCACCCTGCACTTGGTCCTCCGTCTCCGTGGTGG 111753 Score = 123 bits (136), Expect = 2e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 27017 CAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAAT 27076 |||| | || || |||||||||||| | || ||||| || || | ||||| ||||| || Sbjct 112178 CAAGACCATCACCCTTGAAGTGGAATCCTCTGACTCTATCGACAACGTCAAGCAAAAGAT 112119 Query 27077 TCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATT 27136 ||||| ||||||||||| || || |||||||| ||| | || | || || |||||| | Sbjct 112118 CCAAGATAAAGAAGGCATCCCTCCTGATCAACAACGTCTTATCTTTGCTGGTAAACAACT 112059 Query 27137 GGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGT 27196 |||||| | || | || || |||||||| ||||| || || ||| | || ||||| Sbjct 112058 GGAAGATGGCCGCACGCTCTCGGACTACAACATCCAAAAAGAATCCACCCTGCACTTGGT 111999 Query 27197 TTTGCGTTTGCGGGGTGGCAT 27217 | ||| | || ||||| || Sbjct 111998 CCTCCGTCTCCGTGGTGGTAT 111978 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || ||||| |||||| | || ||| | ||||||||| | || Sbjct 112563 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACAATCACTTTGGAAGTGGAATCCTCT 112504 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCAT 27094 |||||||| || | ||||| |||||||| ||||| ||||||||||| Sbjct 112503 GACTCGATCGACAACGTCAAGCAAAAAATCCAAGATAAAGAAGGCAT 112457 >seq3208 Length=262556 Score = 168 bits (186), Expect = 6e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| |||| |||||| |||| ||||| ||||||||| | || Sbjct 84063 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATCACTCTGGAAGTGGAATCCTCA 84004 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| || || | ||||| ||||| |||||||| ||||||||||| || || || || Sbjct 84003 GACTCTATCGACAACGTCAAGCAAAAGATTCAAGATAAAGAAGGCATCCCTCCTGACCAG 83944 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || | || | || ||||||||| | ||||| || || | || ||||||||| Sbjct 83943 CAACGGCTCATCTTTGCAGGCAAACAACTAGAAGATGGTCGCACTCTCTCTGATTACAAC 83884 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || |||||||| || ||| |||| ||||| | ||||| || |||||| Sbjct 83883 ATCCAAAAGGAATCAACCCTACACTTGGTGCTCCGTTTACGAGGTGGC 83836 Score = 167 bits (184), Expect = 2e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || |||||||||||||| || |||||| | ||||| | ||||||||| | || Sbjct 84291 ATGCAAATCTTTGTAAAAACTCTTACTGGCAAGACCATTACATTGGAAGTGGAATCTTCT 84232 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| || || | ||||||||||| || ||||| || |||||||| |||||||| ||| Sbjct 84231 GACTCCATCGACAACGTCAAACAAAAGATCCAAGATAAGGAAGGCATCCCACCCGACCAA 84172 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||| ||||| | ||||| | || | ||||| |||||| Sbjct 84171 CAGCGCCTTATCTTTGCCGGGAAACAGCTTGAAGATGGCCGCACACTCTCCGACTACAAC 84112 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| ||||| | ||| |||| | ||| | || ||||| || Sbjct 84111 ATTCAAAAGGAATCGACTCTTCATCTGGTGCTTCGTCTTCGTGGTGGTAT 84062 >seq3256 Length=796958 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || || |||| |||||| | || ||||| ||||| ||| | || Sbjct 723173 CATGCAAATCTTCGTCAAGACCTTGACTGGCAAGACCATCACTCTCGAAGTTGAATCTTC 723232 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||| || || | ||||| ||||| |||||||| || ||||| || || || || || Sbjct 723233 CGACTCCATCGACAACGTCAAGCAAAAGATTCAAGATAAGGAAGGAATCCCCCCAGACCA 723292 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || || | || | ||||||||| ||||||||||| | || |||| || ||||| Sbjct 723293 GCAACGACTCATCTTCGCCGGCAAGCAATTGGAAGATGGCCGCACTCTTTCTGACTACAA 723352 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||| || || | ||| |||| | ||| | || ||||| || Sbjct 723353 CATTCAAAAGGAATCTACTCTTCATCTGGTCCTCCGTCTCCGTGGTGGTAT 723403 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || |||| || ||| | || ||||| ||||||||| | || Sbjct 724086 ATGCAAATCTTTGTGAAGACCTTGACTGGTAAGACAATCACTCTGGAAGTGGAATCCTCG 724145 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| || || | || || ||||| || |||||||| ||||| || || || || ||| Sbjct 724146 GACTCTATCGACAATGTGAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAA 724205 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||| || |||||||||||||| | || | || || |||||| Sbjct 724206 CAACGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACGCTCTCTGACTACAAC 724265 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| || || || | || |||||| | ||| | || ||||| || Sbjct 724266 ATCCAAAAAGAATCTACTCTTCACTTGGTTCTCCGTCTCCGTGGTGGTAT 724315 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || ||||| || || | || || |||||||||||| | || Sbjct 723858 ATGCAAATCTTCGTCAAGACCCTGACTGGTAAAACAATCACCCTTGAAGTGGAATCCTCT 723917 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| || || | || || ||||| || |||||||| ||||| || || || || ||| Sbjct 723918 GACTCTATCGACAACGTGAAGCAAAAGATCCAAGACAAGGAAGGAATCCCCCCAGACCAA 723977 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | ||| ||||||||| ||||||| || || | || || |||||| Sbjct 723978 CAACGCTTGATCTTCGCTGGCAAACAACTGGAAGATGGTCGCACGCTCTCTGACTACAAC 724037 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || || | || ||||| | ||| | || ||||| || Sbjct 724038 ATCCAAAAGGAATCTACTCTTCACCTGGTTCTCCGTCTCCGTGGTGGTAT 724087 >seq304 Length=62727 Score = 113 bits (124), Expect = 4e-20 Identities = 131/174 (75%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 || |||||||| || | ||||| ||||| ||||||||||| ||||| || || || ||| Sbjct 38992 TCTGACTCGATCGACAATGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGAT 38933 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTA 27163 || || ||| | || | |||||||| ||| | ||||| | || |||| ||||| || Sbjct 38932 CAGCAACGTCTTATCTTTGCCGGCAAGCAACTCGAAGA-TGGCCGTACGTTGTCCGACTA 38874 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| |||||||| || || | |||||||| | ||| | || ||||| || Sbjct 38873 CAACATCCAAAAGGAATCCACTCTCCATTTGGTCCTCCGTCTCCGTGGTGGTAT 38820 >seq197 Length=169696 Score = 109 bits (120), Expect = 5e-19 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 ||||||||||| || | ||||| ||||| || ||||| || ||||| || || || ||| Sbjct 118493 TCCGACTCGATCGACAATGTCAAGCAAAAGATCCAAGATAAGGAAGGTATCCCCCCTGAT 118552 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || || ||||| || | || || || ||||||||||| | || | || || ||| Sbjct 118553 CAGCAACGTTTGATCTTTGCTGGAAAGCAATTGGAAGATGGCCGCACTCTCTCTGACTAC 118612 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| || ||| | |||||||| | ||| | || ||||| || Sbjct 118613 AACATCCAAAAGGAATCCACCCTTCATTTGGTCCTTCGTCTCCGTGGTGGTAT 118665 >seq2275 Length=1761326 Score = 100 bits (110), Expect = 2e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 |||||||| || || | ||||| ||||| || |||||||| ||||| || || || ||| Sbjct 759374 TCCGACTCTATCGACAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCTCCTGAT 759315 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || || ||| | || | || ||||| ||| | |||||| | || | || || ||| Sbjct 759314 CAGCAACGTCTTATCTTTGCTGGCAAGCAACTCGAAGACGGCCGTACTTTGTCTGACTAC 759255 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| || || | || ||||| | ||| | || ||||| || Sbjct 759254 AACATTCAAAAGGAATCCACTCTTCACTTGGTCCTCCGTCTCCGTGGTGGTAT 759202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434889380069760