Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20glauca_20[genbank_20GCA_5F900079185.1_202016-04-15] 5,338 sequences; 48,746,359 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq236 105 5e-18 seq304 93.3 3e-14 seq3256 91.5 1e-13 seq197 86.0 4e-12 seq1528 82.4 5e-11 >seq236 Length=318481 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || || || ||||| || || || || |||| || ||| | | Sbjct 112791 ATGCAAATCTTCGTCAAGACGCTTACAGGCAAGACAATCACCCTTGAAGTGGAATCCTCT 112732 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| ||||| ||||| || ||||| |||||| |||| || | Sbjct 112731 GACTCCATCGACAAT--GTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCAGACC 112674 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| | || |||||||| |||||| |||| || | |||| | | || ||||||| Sbjct 112673 AACAACGTCTCATCTTTGCCGGCAAACAACTGGAAGATGGCCGCACCCTCTCTGATTACA 112614 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||| || |||| | ||||||||| | ||| | ||||| || Sbjct 112613 ACATTCAAAAGGAATCCACTCTTCATTTGGTTCTCCGTCTCCGTGGTGG 112565 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || || ||||| || || || |||| || ||| | | Sbjct 111979 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACAATCACCCTTGAAGTGGAATCCTCT 111920 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | |||| ||||| ||||| || || |||||||| | || || | Sbjct 111919 GACTCTATCGACAAC--GTCAAGCAAAAGATTCAAGATAAAGAAGGCATCCCTCCTGATC 111862 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| | || |||||||| |||||| |||| || | |||| | || || |||| Sbjct 111861 AACAACGTCTTATCTTTGCCGGTAAACAACTGGAAGATGGCCGCACGCTCTCTGACTACA 111802 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| ||| |||| ||||| | ||| | ||||| || Sbjct 111801 ACATCCAAAAAGAATCCACCCTGCACTTGGTCCTCCGTCTCCGTGGTGG 111753 >seq304 Length=62727 Score = 93.3 bits (102), Expect = 3e-14 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 27852 CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCA 27911 |||| ||||| ||||| ||||| || ||||| |||||| |||| || ||||| Sbjct 38985 CGATCGACAAT--GTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAGCA 38928 Query 27912 ACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACAT 27971 ||| | || |||||||| || ||| | || || | || | |||||||| |||||||| Sbjct 38927 ACGTCTTATCTTTGCCGGCAAGCAACTCGAAGATGGCCGTACGTTGTCCGACTACAACAT 38868 Query 27972 CCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||| || |||| | |||||||| | ||| | ||||| || Sbjct 38867 CCAAAAGGAATCCACTCTCCATTTGGTCCTCCGTCTCCGTGGTGG 38823 >seq3256 Length=796958 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || || ||||| || |||||| | || || ||| | | Sbjct 724314 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACTATTACTTTGGAAGTGGAATCCTCT 724373 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | | ||||| ||||| || ||||| |||||| | || || ||| Sbjct 724374 GACTCTATCGATAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAG 724433 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| || || |||||||| || || | || || | || | ||||| || |||||| Sbjct 724434 CAACGTTTGATCTTTGCCGGGAAGCAGCTCGAAGATGGTCGTACTTTGTCTGACTACAAC 724493 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCGA 28019 ||||||||||| ||| | ||| |||| | ||| | ||||| || || Sbjct 724494 ATCCAAAAAGAATCTACTCTCCATCTGGTCCTACGTCTCCGTGGTGGTGA 724543 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || | ||||| || ||||| | || || ||| | || Sbjct 723402 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACCATTACCTTGGAAGTGGAATCCTCC 723461 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | | ||||| ||||| || ||||| |||||| | || || || Sbjct 723462 GACTCTATCGATAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAA 723521 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| || || || || || |||||| |||| || | |||| | || || |||||| Sbjct 723522 CAACGCTTGATCTTCGCTGGCAAACAACTGGAAGATGGTCGCACGCTCTCTGACTACAAC 723581 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||| | ||||||||| | ||| | ||||| || Sbjct 723582 ATCCAAAAGGAATCTACTCTTCATTTGGTTCTCCGTCTCCGTGGTGG 723628 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || ||| | ||||| || || || | || || ||| | | Sbjct 723630 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACAATCACTCTGGAAGTGGAATCCTCT 723689 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| || || ||||| || ||||| |||||| | || || | Sbjct 723690 GACTCTATCGACAAT--GTGAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCTGATC 723747 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| || || || || || |||||| |||| || | |||| | || || |||| Sbjct 723748 AGCAACGTTTGATCTTCGCTGGTAAACAACTGGAAGATGGCCGCACTCTCTCTGACTACA 723807 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| || ||| | || |||||| | ||| | ||||| || Sbjct 723808 ACATCCAAAAGGAATCTACTCTTCACTTGGTTCTCCGTCTCCGTGGTGG 723856 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||| || | ||||| || || || | || || ||| | | Sbjct 724086 ATGCAAATCTTTGTGAAGACCTTGACTGGTAAGACAATCACTCTGGAAGTGGAATCCTCG 724145 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| || || ||||| || ||||| |||||| | || || | Sbjct 724146 GACTCTATCGACAAT--GTGAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCAGACC 724203 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| || || || || || ||||||||||| || | || | | || || |||| Sbjct 724204 AACAACGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACGCTCTCTGACTACA 724263 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| ||| | || |||||| | ||| | ||||| || Sbjct 724264 ACATCCAAAAAGAATCTACTCTTCACTTGGTTCTCCGTCTCCGTGGTGG 724312 >seq197 Length=169696 Score = 86.0 bits (94), Expect = 4e-12 Identities = 125/175 (71%), Gaps = 4/175 (2%) Strand=Plus/Plus Query 27844 AGCACCGAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGA 27901 ||| ||||| ||| ||||| ||||| ||||| || || || |||||| | || Sbjct 118490 AGCTCCGACTCGATCGACAAT--GTCAAGCAAAAGATCCAAGATAAGGAAGGTATCCCCC 118547 Query 27902 TGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCG 27961 || |||||||| || || ||||| ||||| |||||||| || | |||| | || | Sbjct 118548 CTGATCAGCAACGTTTGATCTTTGCTGGAAAGCAATTGGAAGATGGCCGCACTCTCTCTG 118607 Query 27962 ATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | |||||||||||||| || ||| | |||||||| | ||| | ||||| || Sbjct 118608 ACTACAACATCCAAAAGGAATCCACCCTTCATTTGGTCCTTCGTCTCCGTGGTGG 118662 >seq1528 Length=6275 Score = 82.4 bits (90), Expect = 5e-11 Identities = 114/159 (72%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 27858 ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTT 27917 ||||| ||||| ||||| || ||||| |||||| |||| || |||||||| | Sbjct 4378 ACAAT--GTCAAGCAAAAGATCCAAGACAAGGAAGGTATTCCTCCTGATCAGCAACGTCT 4435 Query 27918 AATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAA 27977 || || || || || ||| | || || | |||| |||||||| |||||||||||||| Sbjct 4436 TATCTTCGCTGGCAAGCAACTCGAAGATGGTCGCACTTTGTCCGACTACAACATCCAAAA 4495 Query 27978 AGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || |||| | || ||||| | ||| | ||||| || Sbjct 4496 GGAATCCACTCTTCACTTGGTCCTCCGTCTCCGTGGTGG 4534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355839248704326