Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20glauca_20[genbank_20GCA_5F900079185.1_202016-04-15] 5,338 sequences; 48,746,359 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq236 131 1e-25 seq3256 113 3e-20 seq3208 113 3e-20 seq304 87.8 1e-12 >seq236 Length=318481 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || || || || || || || ||||| || ||||| || ||| | Sbjct 112791 ATGCAAATCTTCGTCAAGACGCTTACAGGCAAGACAATCACCCTTGAAGTGGAATCCTCT 112732 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| | | || | | || ||||| ||| ||||| |||||| | || ||||| ||| Sbjct 112731 GACTCCATCGACAATGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAA 112672 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||||||||||||||||||||| | ||||| | ||||||||| Sbjct 112671 CAACGTCTCATCTTTGCCGGCAAACAACTGGAAGATGGCCGCACCCTCTCTGATTACAAC 112612 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || ||||| || ||||| | ||||| ||| Sbjct 112611 ATTCAAAAGGAATCCACTCTTCATTTGGTT 112582 Score = 122 bits (134), Expect = 6e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || ||||| || || || || ||||| || ||||| || ||| | Sbjct 111979 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACAATCACCCTTGAAGTGGAATCCTCT 111920 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| || | || | | || ||||| ||| || |||||||| | || || |||||| Sbjct 111919 GACTCTATCGACAACGTCAAGCAAAAGATTCAAGATAAAGAAGGCATCCCTCCTGATCAA 111860 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || |||||||| |||||||||||||| | ||||| | || |||||| Sbjct 111859 CAACGTCTTATCTTTGCCGGTAAACAACTGGAAGATGGCCGCACGCTCTCTGACTACAAC 111800 Query 23791 ATACAAAAAGAGTCCAC 23807 || |||||||| ||||| Sbjct 111799 ATCCAAAAAGAATCCAC 111783 Score = 95.1 bits (104), Expect = 8e-15 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 23641 AAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAAAAAATT 23700 || || ||||| || ||||| || ||| | ||| || | || | | || ||||| || Sbjct 112177 AAGACCATCACCCTTGAAGTGGAATCCTCTGACTCTATCGACAACGTCAAGCAAAAGATC 112118 Query 23701 GCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTG 23760 || |||||||| | || || |||||||| ||| | || ||||| || ||||||||| Sbjct 112117 CAAGATAAAGAAGGCATCCCTCCTGATCAACAACGTCTTATCTTTGCTGGTAAACAACTG 112058 Query 23761 GAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807 ||||| | ||||| | || |||||||| |||||||| ||||| Sbjct 112057 GAAGATGGCCGCACGCTCTCGGACTACAACATCCAAAAAGAATCCAC 112011 >seq3256 Length=796958 Score = 113 bits (124), Expect = 3e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||| || || ||||| ||||| || ||||| || ||| | Sbjct 723858 ATGCAAATCTTCGTCAAGACCCTGACTGGTAAAACAATCACCCTTGAAGTGGAATCCTCT 723917 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| || | || | | || ||||| || ||||| ||||| | || ||||| ||| Sbjct 723918 GACTCTATCGACAACGTGAAGCAAAAGATCCAAGACAAGGAAGGAATCCCCCCAGACCAA 723977 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || || || || || ||||||||||||||||| | ||||| | || |||||| Sbjct 723978 CAACGCTTGATCTTCGCTGGCAAACAACTGGAAGATGGTCGCACGCTCTCTGACTACAAC 724037 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| || || || Sbjct 724038 ATCCAAAAGGAATCTAC 724054 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || | || || || || |||||||| ||||| || ||| | Sbjct 723630 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACAATCACTCTGGAAGTGGAATCCTCT 723689 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| || | || | | || ||||| || ||||| |||||| | || || ||||| Sbjct 723690 GACTCTATCGACAATGTGAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCTGATCAG 723749 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || || || || |||||||||||||| | |||||| | || |||||| Sbjct 723750 CAACGTTTGATCTTCGCTGGTAAACAACTGGAAGATGGCCGCACTCTCTCTGACTACAAC 723809 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || ||||| || || || | || || ||| Sbjct 723810 ATCCAAAAGGAATCTACTCTTCACTTGGTT 723839 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| || ||||| || ||| | || || || || ||||||||||||||||| || Sbjct 723171 AACATGCAAATCTTCGTCAAGACCTTGACTGGCAAGACCATCACTCTCGAAGTTGAATCT 723230 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||| | | || | | || ||||| ||| || || ||||| | || ||||| Sbjct 723231 TCCGACTCCATCGACAACGTCAAGCAAAAGATTCAAGATAAGGAAGGAATCCCCCCAGAC 723290 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || || | || || |||||||| ||| ||||||| | |||||| | || ||| Sbjct 723291 CAGCAACGACTCATCTTCGCCGGCAAGCAATTGGAAGATGGCCGCACTCTTTCTGACTAC 723350 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| ||||| || || || Sbjct 723351 AACATTCAAAAGGAATCTAC 723370 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || ||| | || || || || || || | ||||| || ||| | Sbjct 723402 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACCATTACCTTGGAAGTGGAATCCTCC 723461 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| || | || | | || ||||| || ||||| |||||| | || ||||| ||| Sbjct 723462 GACTCTATCGATAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAA 723521 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || || || || || ||||||||||||||||| | ||||| | || |||||| Sbjct 723522 CAACGCTTGATCTTCGCTGGCAAACAACTGGAAGATGGTCGCACGCTCTCTGACTACAAC 723581 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || ||||| || || || | ||||| ||| Sbjct 723582 ATCCAAAAGGAATCTACTCTTCATTTGGTT 723611 >seq3208 Length=262556 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || || || || |||||||| ||||| || ||| | Sbjct 84063 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATCACTCTGGAAGTGGAATCCTCA 84004 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| || | || | | || ||||| ||| || |||||||| | || || || || Sbjct 84003 GACTCTATCGACAACGTCAAGCAAAAGATTCAAGATAAAGAAGGCATCCCTCCTGACCAG 83944 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || | || ||||| ||||||||||| ||||| | |||||| | ||||||||| Sbjct 83943 CAACGGCTCATCTTTGCAGGCAAACAACTAGAAGATGGTCGCACTCTCTCTGATTACAAC 83884 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| || || || |||| || || | | || ||||| || Sbjct 83883 ATCCAAAAGGAATCAACCCTACACTTGGTGCTCCGTTTACGAGGTGG 83837 >seq304 Length=62727 Score = 87.8 bits (96), Expect = 1e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 23689 AAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCC 23748 || ||||| ||| ||||| |||||| | || || ||||| || ||| | || |||||| Sbjct 38971 AAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAGCAACGTCTTATCTTTGCC 38912 Query 23749 GGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACA 23808 ||||| ||||| ||||| | || || || ||| |||||||| ||||| || ||||| Sbjct 38911 GGCAAGCAACTCGAAGATGGCCGTACGTTGTCCGACTACAACATCCAAAAGGAATCCACT 38852 Query 23809 TTACATTTAGT 23819 | ||||| || Sbjct 38851 CTCCATTTGGT 38841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337987610151704