Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20glauca_20[genbank_20GCA_5F900079185.1_202016-04-15] 5,338 sequences; 48,746,359 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3208 178 3e-39 seq236 172 1e-37 seq3256 168 2e-36 seq1528 134 3e-26 seq304 132 1e-25 >seq3208 Length=262556 Score = 178 bits (196), Expect = 3e-39 Identities = 163/205 (80%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | || || || || ||||| || || |||||| ||||||| Sbjct 84060 CAGATCTTCGTCAAGACTTTGACTGGCAAGACTATCACTCTGGAAGTGGAATCCTCAGAC 84001 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| |||||||| ||||||||||| || |||||||| |||||||| ||||||||| Sbjct 84000 TCTATCGACAACGTCAAGCAAAAGATTCAAGATAAAGAAGGCATCCCTCCTGACCAGCAA 83941 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || ||||| || |||||||| | ||||| | ||||| ||| || Sbjct 83940 CGGCTCATCTTTGCAGGCAAACAACTAGAAGATGGTCGCACTCTCTCTGATTACAACATC 83881 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| |||||||| || || |||| Sbjct 83880 CAAAAGGAATCAACCCTACA-CTTG 83857 Score = 159 bits (176), Expect = 8e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || |||||||| || || || || || || | || |||||| || ||| Sbjct 84288 CAAATCTTTGTAAAAACTCTTACTGGCAAGACCATTACATTGGAAGTGGAATCTTCTGAC 84229 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||| ||||||||||||||||| || || || ||||| ||||| || ||||| || Sbjct 84228 TCCATCGACAACGTCAAACAAAAGATCCAAGATAAGGAAGGCATCCCACCCGACCAACAG 84169 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| ||||| |||||||| |||||||| | || || |||| || ||| | Sbjct 84168 CGCCTTATCTTTGCCGGGAAACAGCTTGAAGATGGCCGCACACTCTCCGACTACAACATT 84109 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| ||||| || || ||||| || Sbjct 84108 CAAAAGGAATCGACTCTTCATCTGGT 84083 >seq236 Length=318481 Score = 172 bits (190), Expect = 1e-37 Identities = 162/205 (79%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || || || || || || |||||||| || |||||| ||| ||| Sbjct 111976 CAAATCTTTGTCAAGACCCTGACTGGCAAGACAATCACCCTTGAAGTGGAATCCTCTGAC 111917 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| |||||||| ||||||||||| || |||||||| |||||||| || || ||| Sbjct 111916 TCTATCGACAACGTCAAGCAAAAGATTCAAGATAAAGAAGGCATCCCTCCTGATCAACAA 111857 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| ||||| ||||| || |||||||| | || || | || || ||| || Sbjct 111856 CGTCTTATCTTTGCCGGTAAACAACTGGAAGATGGCCGCACGCTCTCTGACTACAACATC 111797 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||||||||| || ||||| |||| Sbjct 111796 CAAAAAGAATCCACCCTGCA-CTTG 111773 Score = 170 bits (188), Expect = 5e-37 Identities = 162/207 (78%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || ||||| || || |||||||| || |||||| ||| ||| Sbjct 112788 CAAATCTTCGTCAAGACGCTTACAGGCAAGACAATCACCCTTGAAGTGGAATCCTCTGAC 112729 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||| || ||||| ||||||||||| ||||| ||||| || ||||| ||||| ||| Sbjct 112728 TCCATCGACAATGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAACAA 112669 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| ||||| || |||||||| | || || | ||||| ||| | Sbjct 112668 CGTCTCATCTTTGCCGGCAAACAACTGGAAGATGGCCGCACCCTCTCTGATTACAACATT 112609 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| ||||| || || ||| | ||| Sbjct 112608 CAAAAGGAATCCACTCTTCATTTGGTT 112582 Score = 150 bits (166), Expect = 4e-31 Identities = 141/178 (79%), Gaps = 1/178 (1%) Strand=Plus/Minus Query 177951 AAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATT 178010 || || |||||||| || |||||| ||| ||| | ||||| |||||||| |||||||| Sbjct 112177 AAGACCATCACCCTTGAAGTGGAATCCTCTGACTCTATCGACAACGTCAAGCAAAAGATC 112118 Query 178011 CAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTC 178070 || || |||||||| |||||||| || || ||||| |||||||| || || ||||| || Sbjct 112117 CAAGATAAAGAAGGCATCCCTCCTGATCAACAACGTCTTATCTTTGCTGGTAAACAACTG 112058 Query 178071 GAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 |||||||| | || || | || || ||| ||||||||||||| || ||||| |||| Sbjct 112057 GAAGATGGCCGCACGCTCTCGGACTACAACATCCAAAAAGAATCCACCCTGCA-CTTG 112001 >seq3256 Length=796958 Score = 168 bits (186), Expect = 2e-36 Identities = 161/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || || || || ||||| ||||| || ||| || ||| Sbjct 723177 CAAATCTTCGTCAAGACCTTGACTGGCAAGACCATCACTCTCGAAGTTGAATCTTCCGAC 723236 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||| |||||||| ||||||||||| || || ||||||||||| || ||||||||| Sbjct 723237 TCCATCGACAACGTCAAGCAAAAGATTCAAGATAAGGAAGGAATCCCCCCAGACCAGCAA 723296 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||||||||| || || | |||||||| | |||||| | || || ||| | Sbjct 723297 CGACTCATCTTCGCCGGCAAGCAATTGGAAGATGGCCGCACTCTTTCTGACTACAACATT 723356 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| ||||| || || ||||| || Sbjct 723357 CAAAAGGAATCTACTCTTCATCTGGT 723382 Score = 161 bits (178), Expect = 2e-34 Identities = 160/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || || ||||| |||||||| || |||||| ||| ||| Sbjct 723861 CAAATCTTCGTCAAGACCCTGACTGGTAAAACAATCACCCTTGAAGTGGAATCCTCTGAC 723920 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || |||||||| || ||||| ||||||||||| || ||||| ||| Sbjct 723921 TCTATCGACAACGTGAAGCAAAAGATCCAAGACAAGGAAGGAATCCCCCCAGACCAACAA 723980 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || ||||| || |||||||| | || || | || || ||| || Sbjct 723981 CGCTTGATCTTCGCTGGCAAACAACTGGAAGATGGTCGCACGCTCTCTGACTACAACATC 724040 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| ||||| || || || || ||| Sbjct 724041 CAAAAGGAATCTACTCTTCACCTGGTT 724067 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || || || || || || || || | || |||||| ||| ||| Sbjct 724317 CAAATCTTTGTCAAGACCCTGACTGGCAAGACTATTACTTTGGAAGTGGAATCCTCTGAC 724376 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| |||||||| |||||||| || ||||| ||||| ||||| || ||||||||| Sbjct 724377 TCTATCGATAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAGCAA 724436 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||| || |||||||||||||| | ||| | | || || ||| || Sbjct 724437 CGTTTGATCTTTGCCGGGAAGCAGCTCGAAGATGGTCGTACTTTGTCTGACTACAACATC 724496 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||| || || ||||| || Sbjct 724497 CAAAAAGAATCTACTCTCCATCTGGT 724522 Score = 138 bits (152), Expect = 3e-27 Identities = 156/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| || | || || || || ||||| || || |||||| ||| ||| Sbjct 724089 CAAATCTTTGTGAAGACCTTGACTGGTAAGACAATCACTCTGGAAGTGGAATCCTCGGAC 724148 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| || || || |||||||| || ||||| ||||| ||||| || ||||| ||| Sbjct 724149 TCTATCGACAATGTGAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAACAA 724208 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || ||||| | |||||||| | || || | || || ||| || Sbjct 724209 CGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACGCTCTCTGACTACAACATC 724268 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 ||||||||||| || || || |||| || Sbjct 724269 CAAAAAGAATCTACTCTTCA-CTTGGTT 724295 >seq1528 Length=6275 Score = 134 bits (148), Expect = 3e-26 Identities = 123/154 (80%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||||| ||| ||||||| || ||||| |||||||| || ||||| ||||| || ||||| Sbjct 4362 AGCTCCGACTCCATCGACAATGTCAAGCAAAAGATCCAAGACAAGGAAGGTATTCCTCCT 4421 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || |||||||| ||||||||||| || || || ||||||||||| | ||| | |||| Sbjct 4422 GATCAGCAACGTCTTATCTTCGCTGGCAAGCAACTCGAAGATGGTCGCACTTTGTCCGAC 4481 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || ||| ||||||| ||||| || || || |||| Sbjct 4482 TACAACATCCAAAAGGAATCCACTCTTCA-CTTG 4514 >seq304 Length=62727 Score = 132 bits (146), Expect = 1e-25 Identities = 120/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 177974 AAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCC 178033 |||||| ||| | ||||| || ||||| ||||||||||| ||||| ||||| || ||||| Sbjct 38996 AAGCTCTGACTCGATCGACAATGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCC 38937 Query 178034 GGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGA 178093 || |||||||| |||||||| ||||| || || ||||||||||| | || | |||| Sbjct 38936 TGATCAGCAACGTCTTATCTTTGCCGGCAAGCAACTCGAAGATGGCCGTACGTTGTCCGA 38877 Query 178094 TTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || ||| ||||||| ||||| || || ||| Sbjct 38876 CTACAACATCCAAAAGGAATCCACTCTCCAT 38846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203648873061572