Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20glauca_20[genbank_20GCA_5F900079185.1_202016-04-15] 5,338 sequences; 48,746,359 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3208 111 1e-19 seq236 104 2e-17 seq3256 95.1 1e-14 >seq3208 Length=262556 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||||||| || || ||||| |||||||| ||||||||| Sbjct 84065 CCACCACGAAGACGAAGCACCAGATGAAGAGTCGATTCCTTTTGAATGTTGTAGTCGGAG 84124 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || ||||| || ||||| || || |||||||||||||| | || Sbjct 84125 AGTGTGCGGCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGGCGCTGTTGGTCGGGTGGG 84184 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||| || ||| ||||| || ||| | | | | ||| || ||||| Sbjct 84185 ATGCCTTCCTTATCTTGGATCTTTTG-TTTGACGTTGTCGATGGAGTCAGAAGATTCCAC 84243 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || || || || ||||| || || ||||| Sbjct 84244 TTCCAATGTAATGGTCTTGCCAGTAAGAGTTTTTACAAAGATTTGCAT 84291 >seq236 Length=318481 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| ||| || ||| ||||| |||||||| || || ||| Sbjct 112565 CCACCACGGAGACGGAGAACCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGAG 112624 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || || || |||||||| || || || || |||||||| | ||| Sbjct 112625 AGGGTGCGGCCATCTTCCAGTTGTTTGCCGGCAAAGATGAGACGTTGTTGGTCTGGAGGA 112684 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | | |||||||| || |||||||| || | || | | ||| || |||| Sbjct 112685 ATACCTTCCTTGTCTTGAATCTTTTGCTTGACATTGTCG--ATGGAGTCAGAGGATTCCA 112742 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || | || || || || || || |||||||| ||||| || |||||| Sbjct 112743 CTTCAAGGGTGATTGTCTTGCCTGTAAGCGTCTTGACGAAGATTTGCATG 112792 >seq3256 Length=796958 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||||||| || || ||||| |||||||| ||||| || Sbjct 723400 CCACCACGGAGACGGAGGACCAGATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAA 723341 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || | |||||||||||||| || || || || ||||| | ||| Sbjct 723340 AGAGTGCGGCCATCTTCCAATTGCTTGCCGGCGAAGATGAGTCGTTGCTGGTCTGGGGGG 723281 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||| || || |||||||| ||| | | | | |||| || || || Sbjct 723280 ATTCCTTCCTTATCTTGAATCTTTTGCTT-GACGTTGTCGATGGAGTCGGAAGATTCAAC 723222 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || | || || || || || |||| ||||| ||||| || |||||||| Sbjct 723221 TTCGAGAGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCATGTT 723171 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||||| |||||||| || || || || || ||||| ||||| || Sbjct 724540 CCACCACGGAGACGTAGGACCAGATGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAC 724481 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || ||||||||||| ||||| || |||| || || ||||| | ||| Sbjct 724480 AAAGTACGACCATCTTCGAGCTGCTTCCCGGCAAAGATCAAACGTTGCTGGTCTGGGGGG 724421 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||| ||| |||||||| ||| | | || ||| || ||||| Sbjct 724420 ATACCTTCCTTGTCTTGGATCTTTTGCTT-GACGTTATCGATAGAGTCAGAGGATTCCAC 724362 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || ||||| ||||| || || || ||||| Sbjct 724361 TTCCAAAGTAATAGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 724314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462273152765600