Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq45 129 6e-25 seq2 111 2e-19 >seq45 Length=1879501 Score = 129 bits (142), Expect = 6e-25 Identities = 291/434 (67%), Gaps = 4/434 (1%) Strand=Plus/Plus Query 15913 TTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTC 15972 |||||||||| || || |||||||| ||||| ||||| || | | ||| || | || Sbjct 1418084 TTGGTAATCAGATACACGCTTTTCGAAAAAGTTGGTTTTGCCTTGAAGAGAGATCATGTC 1418143 Query 15973 CATAAAATCAAAGGGATTAGTAGC--TGAAAATATCTTAGAGTACCCCAGTTCCGTAACT 16030 |||||| ||||| ||||| ||||| || || | | ||| |||| || | || Sbjct 1418144 CATAAAGTCAAATGGATTGGTAGCATTGTAATGCTTGTTGAG-ACCCAAGG-CGACAAGC 1418201 Query 16031 AATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGT 16090 || | ||| || |||||||| || ||||||||||| | | | ||| || || || || Sbjct 1418202 AAGCGATCGGCAACAAATTCAATGTATTGACACATGAGCTTGGCATTCATACCAATCAGG 1418261 Query 16091 CGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATA 16150 || |||||||| | || || |||| |||||| || |||| ||||| ||||||| Sbjct 1418262 GACACGGGAAGAGCATCAGTCAAGAATTCTTGTTCAATAGCAACAGCTTCAACAATGATA 1418321 Query 16151 TCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAG 16210 | ||| | || ||| | | | || ||| | | ||| || || Sbjct 1418322 CCAAGAATACGTTCATGGGATGGTTGCTTGCGCAAATGAGAAAAGAGCAAACAAGCAAAA 1418381 Query 16211 TCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATT 16270 || || || ||||| || | | || || || ||| |||||| || |||||||| Sbjct 1418382 TCAGTGTGAAGACCTTCATCACGGGAAATGAGCTCATTGCTAAAAGTCAAGCCTGGCATA 1418441 Query 16271 TTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCA 16330 || |||||||| | ||| || || | |||||| || || |||||||| || || || Sbjct 1418442 AGACCACGTTTCTTGAGCCAAAAGATGGAAGCAAAAGAGCCAGAAAAGAAGATGCCTTCT 1418501 Query 16331 ACAGATGCAAAAGC 16344 |||| |||||||| Sbjct 1418502 ACAGCAGCAAAAGC 1418515 Score = 82.4 bits (90), Expect = 8e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 16427 GTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATC 16486 ||||| || || | ||| | | || ||||| ||| ||| | ||||| || |||||| Sbjct 1418674 GTTTCAATCGCGTCAAAGAGCATTTCCTTTTCTTGAGAATCCTTGATATAAGTGTCAATC 1418733 Query 16487 AGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCAT 16546 | | ||| || | || ||||| ||||| || || || || ||||||||||| || Sbjct 1418734 AAAAGACTATAAGTCTCAGAGTGGATGTTTTCAATCATGATTTGGAATCCATAGAAACAC 1418793 Query 16547 CGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATA 16606 || || || ||||| ||||| | | || || ||| | || |||||||| |||||| Sbjct 1418794 TTGGCTTCAGCAATTTGGACTTCGTTGCAGAAACGCTCCACAAGATTCTCATTGACGATA 1418853 Query 16607 CCGTC 16611 || || Sbjct 1418854 CCATC 1418858 >seq2 Length=1153633 Score = 111 bits (122), Expect = 2e-19 Identities = 297/449 (66%), Gaps = 4/449 (1%) Strand=Plus/Minus Query 15913 TTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTC 15972 ||| ||||| || || || || |||||||| || || |||| | ||| || | || Sbjct 770845 TTGATAATCTGACACTCGCTTCTCAAAGAAGTTGGTCTTGCCCTGAAGAGAAATCATGTC 770786 Query 15973 CATAAAATCAAAGGGATTAGTAG-CTGAAAATATCTTAGAGTAC-CCCAGTTCCGTAACT 16030 |||||| ||||||||||| || | ||| ||| ||| | ||| || || || | Sbjct 770785 CATAAAGTCAAAGGGATTGGTTGAATGATAAT-GCTT-GTCTACGCCAAGAGCCACCAAA 770728 Query 16031 AATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGT 16090 | | ||| || |||||||| || || |||||||| | | | ||| || || || | Sbjct 770727 AGACGATCCGCCACAAATTCAATGTACTGACACATGAGCTTGGCATTCATACCAATCAAA 770668 Query 16091 CGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATA 16150 || || | ||| | |||||| |||| ||| || || ||| ||||| |||||||| Sbjct 770667 GAAACAGGTAAAGCATCTGTTAAGAATTCTTGCTCGATATTAACAGCTTCAATAATGATA 770608 Query 16151 TCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAG 16210 || | ||| | ||| || ||| || || ||||| ||||| || || Sbjct 770607 TCACGGATACGTTGATGAGATGGCTGATGACGAAGATGAGAAAACAAGAGACATGCAAAA 770548 Query 16211 TCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATT 16270 ||| ||||| |||||| || | ||||| ||||| || || | |||||||| Sbjct 770547 TCGGTATGTAATCCTTCATCACGTGAAATAAGCTCGTTACTGAATGTAAGACCTGGCATC 770488 Query 16271 TTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCA 16330 ||| || || || | ||| || || | |||||| || || |||||||| || || || Sbjct 770487 AATCCACGCTTTTTGAGCCAAAAGATAGAAGCAAAAGAACCAGAAAAGAAGATGCCTTCC 770428 Query 16331 ACAGATGCAAAAGCGATTAATCGTTCCGC 16359 || | || || || | || ||||| || Sbjct 770427 ACTGCAGCGAATGCAACTAGACGTTCAGC 770399 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 16427 GTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATC 16486 ||||| || || | ||| | | |||||||| ||| ||| | ||||| || |||||| Sbjct 770272 GTTTCAATAGCATCAAAGAGCATTTCTTTTTCTTGAGGATCCTTGATATAAGTGTCAATC 770213 Query 16487 AGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCAT 16546 | | |||||| | || ||||| ||||| || || ||||| |||||||||||||| Sbjct 770212 AAAAGACTGTAAGTCTCAGAGTGAATGTTTTCAATCATGATCTGGAATCCATAGAAGCAC 770153 Query 16547 CGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATA 16606 || || || ||||| ||||| | | || || || | || |||||||| |||||| Sbjct 770152 TTGGCTTCAGCAATTTGGACTTCGTTGCAGAAACGCTCTACAAGATTCTCATTGACGATA 770093 Query 16607 CCGTC 16611 || || Sbjct 770092 CCATC 770088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511413926941680