Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq4 91.5 1e-13 seq1 87.8 2e-12 >seq4 Length=1091430 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || |||| || ||||| ||||| ||||| || ||| ||| || | Sbjct 753487 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACCATCACTTTGGAAGTTGAATCCTCT 753546 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || | | | | ||||| | || || ||||| |||||| | || ||| || Sbjct 753547 GATTCTATTGAAAACGTTAAGAATAAGATCCAAGATAAGGAAGGTATTCCTCCAGACCAG 753606 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | || || ||| ||||| ||||| |||||| | ||| || | |||||||| Sbjct 753607 CAACGTCTCATTTTTCGTGGCAAGCAACTTGAAGATGGCCGTACTTTGTCTGATTACAAC 753666 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTG 29171 || || |||||||||||||||||| ||||| Sbjct 753667 ATCCAAAAGGAATCTACTCTTCACTTGGTG 753696 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || |||| || ||||| ||||| |||||||| ||| || | | Sbjct 753715 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACCATTACTTTGGAAGTTGAGTCTTCT 753774 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || | | | || | ||| | || || || || |||||| | || ||| || Sbjct 753775 GATTCTATTGAAAATGTCAAGAACAAGATCCAAGACAAGGAAGGTATTCCTCCAGACCAG 753834 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | |||||||| ||||||||||| |||||| | ||| || | || ||||| Sbjct 753835 CAACGTTTGATCTTTGCAGGCAAACAACTTGAAGATGGCCGTACTTTGTCTGACTACAAC 753894 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTG 29171 || || |||||||||||||||||| ||||| Sbjct 753895 ATCCAAAAGGAATCTACTCTTCACTTGGTG 753924 >seq1 Length=3088551 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || ||||| | ||| |||||| ||| | || |||||||| ||||||||||| ||| Sbjct 605658 GACAAGGAAGGCATTCCCCCAGATCAGCAACGTCTCATCTTTGCAGGCAAACAACTTGAA 605717 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||| ||| || | || ||||| ||||| ||||| |||||||||||| |||| Sbjct 605718 GATGGTCGTACTTTGTCAGACTACAACATTCAAAAGGAGTCTACTCTTCACTTGGT 605773 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| ||||| | || ||| || || | || |||||||| ||||||||||| ||| Sbjct 605886 GATAAGGAAGGCATTCCTCCAGACCAGCAGCGTCTCATCTTTGCAGGCAAACAACTTGAA 605945 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||| ||| || | || |||||||| || |||||||||||||||||| |||| Sbjct 605946 GATGGTCGTACTTTGTCAGACTACAATATCCAAAAGGAATCTACTCTTCACTTGGT 606001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428335613694470