Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq9 111 1e-19 seq4 104 2e-17 seq1 96.9 3e-15 >seq9 Length=614693 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| ||| ||||| |||||||||||||| || || || | || || | | || Sbjct 95431 AGCACCAAATGTAAAGTCGACTCCTTTTGAATATTGTAATCGGAAAGTGTACGACCATCT 95372 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || || |||||||| || |||| || | ||||||||| || | ||||||||||| Sbjct 95371 TCAAGTTGTTTGCCAGCGAAAATGAGACGTTGCTGGTCCGGAGGAATTCCTTCCTTGTCC 95312 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||||||| || || | | | || |||| | || ||||| || |||||| Sbjct 95311 TGGATCTTTTGCTTGACGTTTTCAATAGAATCAGATGATTCTACTTCCAATGTGATGGTC 95252 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || || || | || |||||||| ||||||||| || Sbjct 95251 TTTCCAGTGAGAGTCTTGACAAAGATTTGCATTGTG 95216 >seq4 Length=1091430 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | ||| || |||||||| ||||| ||||| | || || || | || Sbjct 753926 AGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATCT 753867 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || || |||||||| ||| | || | | |||||||| || | ||||||||||| Sbjct 753866 TCAAGTTGTTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTGTCT 753807 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| | || || | | | || |||| | ||| ||||| ||||||||| Sbjct 753806 TGGATCTTGTTCTTGACATTTTCAATAGAATCAGAAGACTCAACTTCCAAAGTAATGGTC 753747 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || || || |||||||| |||||||| Sbjct 753746 TTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 753715 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | ||||||||||||||| ||||| || || | || || | | || Sbjct 753470 AGCACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTACGACCATCT 753411 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || || |||||||| ||| | || | | |||||||| || | ||||||||| || Sbjct 753410 TCAAGTTGTTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAGGAATGCCTTCCTTATCT 753351 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| | || || | | | | |||| | ||| ||||| || || ||| Sbjct 753350 TGGATCTTGTTCTTGACGTTTTCAATGGAATCAGAAGACTCGACTTCCAAAGTGATAGTC 753291 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| | || |||||||| |||||||| Sbjct 753290 TTGCCGGTAAGTGTCTTGACAAAGATTTGCAT 753259 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | ||| || |||||||| ||||| || || | || || || | || Sbjct 753698 AGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGACAAAGTACGGCCATCT 753639 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || || || ||||| | |||| || | |||||||| || | |||||||| || Sbjct 753638 TCAAGTTGCTTGCCACGAAAAATGAGACGTTGCTGGTCTGGAGGAATACCTTCCTTATCT 753579 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| | || || | | | || |||| || || ||||| || |||||| Sbjct 753578 TGGATCTTATTCTTAACGTTTTCAATAGAATCAGAGGATTCAACTTCCAAAGTGATGGTC 753519 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || || || |||||||| |||||||| Sbjct 753518 TTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 753487 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 20978 AGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCC 21037 ||||||||||||||| ||||| ||||| | || || | | || || || || ||||| Sbjct 754140 AGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGACCATCTTCAAGTTGCTTGCC 754081 Query 21038 CGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTT 21097 || |||| || | ||||| || || | |||||||| || |||||| | || Sbjct 754080 AGCGAAAATGAGACGTTGCTGATCTGGTGGGATACCTTCCTTATCTTGGATCTTGTTCTT 754021 Query 21098 CACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGT 21157 || | | | || |||| | || ||||| || ||||||||||| || || || Sbjct 754020 GACATTTTCAATAGAATCAGAAGATTCAACTTCCAAAGTGATGGTCTTGCCAGTCAAAGT 753961 Query 21158 TTTGACAAATATTTGCAT 21175 |||||||| |||||||| Sbjct 753960 CTTGACAAAGATTTGCAT 753943 >seq1 Length=3088551 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| || | ||| ||||||||||||||||| ||||| | || || | | || Sbjct 605776 AGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCTGACAAAGTACGACCATCT 605717 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || || |||||||| ||| | || || | ||||| || ||| | |||||||||||| Sbjct 605716 TCAAGTTGTTTGCCTGCAAAGATGAGACGTTGCTGATCTGGGGGAATGCCTTCCTTGTCT 605657 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||| | || || | | | | |||| | |||| |||| ||| || ||| Sbjct 605656 TGAATCTTGTTCTTGACGTTTTCAATGGAATCAGATGACTCCACCTCCAAGGTGATAGTC 605597 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAA 21181 ||||| || | || ||||| || |||||||| ||||| Sbjct 605596 TTGCCAGTAAGGGTCTTGACGAAGATTTGCATGTTGAA 605559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422258819174984