Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq45 125 7e-24 seq9 102 8e-17 seq1 100 3e-16 seq4 95.1 1e-14 seq2 86.0 6e-12 >seq45 Length=1879501 Score = 125 bits (138), Expect = 7e-24 Identities = 131/172 (76%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 117027 CCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTT 117086 |||| | || || || || || || || || || || ||| |||||||||| ||| || Sbjct 1418535 CCTTTGCTGAACGTCTTGTTGCTTTTGCTGCTGTAGAAGGCATCTTCTTTTCTGGCTCTT 1418476 Query 117087 TCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACG 117146 | || |||| ||||||||||||||||| || || ||||| ||| ||||||| ||||| | Sbjct 1418475 TTGCTTCCATCTTTTGGCTCAAGAAACGTGGTCTTATGCCAGGCTTGACTTTTAGCAATG 1418416 Query 117147 AGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTT 117198 ||||||| ||| | || || ||||| || || ||||| |||||||| || Sbjct 1418415 AGCTCATTTCCCGTGATGAAGGTCTTCACACTGATTTTGCTTGTTTGCTCTT 1418364 >seq9 Length=614693 Score = 102 bits (112), Expect = 8e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || || || || ||||| || || |||||||| | || || ||| | | Sbjct 95219 AATGCAAATCTTTGTCAAGACTCTCACTGGAAAGACCATCACATTGGAAGTAGAATCATC 95278 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | | ||||| ||||| |||| || | ||||| || || || || |||||| Sbjct 95279 TGATTCTATTGAAAACG-TCAAGCAAAAGATCCAGGACAAGGAAGGAATTCCTCCGGACC 95337 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||||| ||||| | ||| |||||||| || || || | || || || ||| |||| Sbjct 95338 AGCAACGTCTCATTTTCGCTGGCAAACAACTTGAAGATGGTCGTACACTTTCCGATTACA 95397 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTT 40907 | || || |||||| | || | ||| | ||| | ||||| Sbjct 95398 ATATTCAAAAGGAGTCGACTTTACATTTGGTGCTTCGCTT 95437 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || || ||||| || ||||| | || || ||| | || Sbjct 95448 ATGCAAATCTTTGTCAAGACTCTTACTGGCAAGACTATCACACTTGAAGTGGAATCGTCC 95507 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | ||||| | || |||| ||||| || || || || | || ||| Sbjct 95508 GATTCTATTGAGAATGTCAAGAACAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAG 95567 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | || | ||| ||||||||||| || |||| || || || || |||||| Sbjct 95568 CAACGTTTGATTTTCGCTGGCAAACAGCTTGAAGACGGCCGTACTCTTTCTGATTACAAC 95627 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGG 40919 ||||| || || ||||| |||| | || || |||||| | ||||| || Sbjct 95628 ATCCAAAAAGAATCCACGTTGCACTTGGTATTACGCTTGCGTGGCGGTGG 95677 >seq1 Length=3088551 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || |||||||| ||||| || || || || ||||| || |||||| | || || || | Sbjct 605562 AACATGCAAATCTTCGTCAAGACCCTTACTGGCAAGACTATCACCTTGGAGGTGGAGTCA 605621 Query 40747 ACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | || | | | ||||| ||||| | || |||| ||||| || ||||| ||| | || Sbjct 605622 TCTGATTCCATTGAAAACG-TCAAGAACAAGATTCAAGACAAGGAAGGCATTCCCCCAGA 605680 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||||| ||||||| || |||||||| || || || | || || | ||||| Sbjct 605681 TCAGCAACGTCTCATCTTTGCAGGCAAACAACTTGAAGATGGTCGTACTTTGTCAGACTA 605740 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCA 40892 |||||| || |||||| | || || || Sbjct 605741 CAACATTCAAAAGGAGTCTACTCTTCA 605767 >seq4 Length=1091430 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | || ||||| |||||||| | || || ||| | | Sbjct 753943 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACCATCACTTTGGAAGTTGAATCTTCT 754002 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | ||| ||||| | || || | || || || || ||||| | || ||| Sbjct 754003 GATTCTATTGAAAATGTCAAGAACAAGATCCAAGATAAGGAAGGTATCCCACCAGATCAG 754062 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||| | ||| ||||| || || || || | || || || ||||||||| Sbjct 754063 CAACGTCTCATTTTCGCTGGCAAGCAACTTGAAGATGGTCGTACTCTTTCTGACTACAAC 754122 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| |||||| |||| || || || |||||||| Sbjct 754123 ATCCAAAAGGAGTCCACTCTTCACCTCGTGTTGCG 754157 Score = 82.4 bits (90), Expect = 8e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || || ||||| || ||||| | || ||||| | | Sbjct 753259 ATGCAAATCTTTGTCAAGACACTTACCGGCAAGACTATCACTTTGGAAGTCGAGTCTTCT 753318 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | ||||| ||||| | || || | || || || ||||| || | ||||| Sbjct 753319 GATTCCATTGAAAACG-TCAAGAACAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCA 753377 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| || |||||||| || || || | || || | || ||||| Sbjct 753378 GCAACGTTTGATCTTTGCAGGCAAACAACTTGAAGATGGTCGTACTTTGTCTGATTACAA 753437 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||| |||||| |||| || || Sbjct 753438 CATCCAAAAGGAGTCCACTCTTCA 753461 >seq2 Length=1153633 Score = 86.0 bits (94), Expect = 6e-12 Identities = 153/223 (69%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 116976 TCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCG 117035 |||| ||||||| || ||||| | || |||||| | || | | | || | | Sbjct 770346 TCAAGAAGAAGGCAGAATGGGCATTTCGATGGATCTCTTCCA---ATGGATCTTTTGCTG 770402 Query 117036 AGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCA 117095 | || || || || ||||| || || || ||| |||||||||| || ||| || | | Sbjct 770403 AACGTCTAGTTGCATTCGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCTTCTA 770462 Query 117096 TATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCT 117155 | ||||||||||| || || || | ||||| || || || ||||| |||||||| || | Sbjct 770463 TCTTTTGGCTCAAAAAGCGTGGATTGATGCCAGGTCTTACATTCAGTAACGAGCTTATTT 770522 Query 117156 CCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTT 117198 | | || || || | ||| ||| ||||| ||| | |||| Sbjct 770523 CACGTGATGAAGGATTACATACCGATTTTGCATGTCTCTTGTT 770565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218723422240