Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1 118 9e-22 seq4 104 2e-17 seq9 91.5 1e-13 seq12 89.7 4e-13 seq73 82.4 7e-11 >seq1 Length=3088551 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | |||||||| |||||||||||||| || || ||| || ||| || Sbjct 605773 ACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCTGACAAAGTACGACCATCTTCA 605714 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || ||||| || || |||||||||| |||||||| || || ||||| ||||||||| | Sbjct 605713 AGTTGTTTGCCTGCAAAGATGAGACGTTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGA 605654 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || | || || | ||| | || || | ||| ||||| | ||| | || ||| Sbjct 605653 ATCTTGTTCTTGACGTTTTCAATGGAATCAGATGACTCCACCTCCAAGGTGATAGTCTTG 605594 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || || || || |||||| Sbjct 605593 CCAGTAAGGGTCTTGACGAAGATTTGCATG 605564 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | |||||||| ||||||||||||||||| || ||| || ||| ||| Sbjct 606229 ACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCAGACAAAGTACGACCATCTTCG 606170 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || ||||| || |||| | || ||||| || ||||| ||||| ||||| ||| Sbjct 606169 AGTTGCTTTCCTGCAAAGATCAAGCGTTGCTGGTCTGGAGGAATGCCTTCCTTATCTTGG 606110 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || | || || | || | | || | ||| || || | || | || ||| Sbjct 606109 ATCTTGTTCTTGACATTCTCAATAGAATCAGATGACTCAACTTCCAAAGTGATAGTCTTG 606050 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||| || ||||| |||||||| Sbjct 606049 CCAGTCAAAGTCTTGACAAAGATCTGCAT 606021 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | ||||| || ||||| || ||||| || || ||| || ||| || Sbjct 606001 ACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCTGACAAAGTACGACCATCTTCA 605942 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || ||||| || || |||||||||||||||| || ||||| ||||| ||||| || Sbjct 605941 AGTTGTTTGCCTGCAAAGATGAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTATCCTGG 605882 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || | || || | ||| | | || | ||| || || | || | || ||| Sbjct 605881 ATCTTGTTCTTGACGTTTTCAATAGAATCAGATGACTCAACTTCCAAAGTGATAGTCTTG 605822 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||| || ||||| |||||||| Sbjct 605821 CCAGTCAAAGTCTTGACAAAGATCTGCAT 605793 >seq4 Length=1091430 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||||| ||||| ||||||||||| || ||| || ||| || Sbjct 753468 CACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTACGACCATCTTC 753409 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 || ||||| || || |||| | ||| ||||| || ||||| ||||| ||||| ||| Sbjct 753408 AAGTTGTTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAGGAATGCCTTCCTTATCTTG 753349 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || | || || | ||| | || || | |||||| || | || | || || Sbjct 753348 GATCTTGTTCTTGACGTTTTCAATGGAATCAGAAGACTCGACTTCCAAAGTGATAGTCTT 753289 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 |||||| || || || ||||| || ||||||| Sbjct 753288 GCCGGTAAGTGTCTTGACAAAGATTTGCATGG 753257 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | ||||| || ||||| ||||||||||| || ||| || ||| || Sbjct 753696 CACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGACAAAGTACGGCCATCTTC 753637 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 || || || ||| | |||||||| ||||| || ||||| || || ||||| ||| Sbjct 753636 AAGTTGCTTGCCACGAAAAATGAGACGTTGCTGGTCTGGAGGAATACCTTCCTTATCTTG 753577 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || | ||||| | ||| | | || | | || || || | || | || || Sbjct 753576 GATCTTATTCTTAACGTTTTCAATAGAATCAGAGGATTCAACTTCCAAAGTGATGGTCTT 753517 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| |||| ||| || ||||| || ||||| Sbjct 753516 GCCAGTCAAAGTCTTGACAAAGATTTGCAT 753487 >seq9 Length=614693 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || || | || |||||||| | || || |||||||| ||||||||||| Sbjct 95675 ACCGCCACGCAAGCGTAATACCAAGTGCAACGTGGATTCTTTTTGGATGTTGTAATCAGA 95616 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||| || || || |||||||| |||||| | || | ||| |||||||| ||||| Sbjct 95615 AAGAGTACGGCCGTCTTCAAGCTGTTTGCCAGCGAAAATCAAACGTTGCTGATCAGGAGG 95556 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||||||| ||| || | || || | || | | || | || || Sbjct 95555 AATACCTTCCTTGTCTTGAATCTTGTTCTTGACATTCTCAATAGAATCGGACGATTCCAC 95496 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | || ||||| || ||||| || ||||| || ||||| Sbjct 95495 TTCAAGTGTGATAGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 95448 >seq12 Length=2893134 Score = 89.7 bits (98), Expect = 4e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 133849 AATACTGGACGATCTCGGCGCAGAGGTTGCTGCATTTGATGGTGCCCAAAtttttttGAT 133908 |||||| ||| ||||| | ||| || ||||||||||||||||||||||| |||| |||| Sbjct 1077878 AATACTCGACAATCTCTGTGCAAAGATTGCTGCATTTGATGGTGCCCAAGTTTTGCTGAT 1077937 Query 133909 TGCTAAAGTTATTGCAATGATCCTTGTATAGCATGTACGGCCCGCCGGTTTC 133960 || | |||||| ||||||||||| |||| | || || || ||||| Sbjct 1077938 TGGATTTGCGATTGCATGCATCCTTGTATAACATGAATGGACCACCAGTTTC 1077989 >seq73 Length=1220876 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133806 GCAATACTGGCTAGATTACAAACGGCCGTCTCGTTCTCGTCGCAATACTGGACGATCTCG 133865 ||||||||||| ||||| || || ||| || | |||||| ||| || || Sbjct 415076 GCAATACTGGCCAGATTGCATACAGCCACTTCATCAGGAGAAGAATACTCGACAATTTCT 415017 Query 133866 GCGCAGAGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAA 133925 | ||| || ||||||||||||||||| ||||| |||| |||||| | |||||| Sbjct 415016 GTGCAAAGATTGCTGCATTTGATGGTACCCAAGTTTTGCTGATTGGATTTGCGATTGCAT 414957 Query 133926 TGATCCTTGTATAGCATGTACGGCCCGCCGGTTTC 133960 ||||||||||| |||| | || || || ||||| Sbjct 414956 GCATCCTTGTATAACATGAATGGACCACCAGTTTC 414922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830008739208