Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq9 123 3e-23 seq1 86.0 7e-12 seq34 82.4 9e-11 seq23 82.4 9e-11 seq11 82.4 9e-11 seq7 82.4 9e-11 >seq9 Length=614693 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || | ||| || | ||||||||| || || ||||||||||||||||||||| | Sbjct 95446 CCACCACGTAAGCGAAGCACCAAATGTAAAGTCGACTCCTTTTGAATATTGTAATCGGAA 95387 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || || || || |||||||| ||||| || |||||||| | || Sbjct 95386 AGTGTACGACCATCTTCAAGTTGTTTGCCAGCGAAAATGAGACGTTGCTGGTCCGGAGGA 95327 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | ||||||||| ||| ||||| |||| | | | | || ||||| || Sbjct 95326 ATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTTTCAATAGAATCAGATGATTCTACT 95267 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | |||||||| || || || || ||||| ||||||||||||||| Sbjct 95266 TCCAATGTGATGGTCTTTCCAGTGAGAGTCTTGACAAAGATTTGCATT 95219 Score = 109 bits (120), Expect = 6e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 42966 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 43025 || || || ||||| ||||| ||| || ||||| || |||||||||| ||||| || Sbjct 95665 AAGCGTAATACCAAGTGCAACGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGG 95606 Query 43026 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCC 43085 |||| || ||||| || |||||||| || | || ||||| || | || | | ||| Sbjct 95605 CCGTCTTCAAGCTGTTTGCCAGCGAAAATCAAACGTTGCTGATCAGGAGGAATACCTTCC 95546 Query 43086 TTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTG 43145 ||||| || || | |||| || | | | ||| ||||||||| || | ||| Sbjct 95545 TTGTCTTGAATCTTGTTCTTGACATTCTCAATAGAATCGGACGATTCCACTTCAAGTGTG 95486 Query 43146 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || ||||| || || ||||| |||||||||||||| Sbjct 95485 ATAGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 95448 Score = 82.4 bits (90), Expect = 9e-11 Identities = 61/69 (88%), Gaps = 2/69 (3%) Strand=Plus/Plus Query 60069 CTCGG-CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATA 60127 ||||| | |||||| |||||| ||||||||||||||||||||| ||||| ||||||||| Sbjct 548636 CTCGGACCGGGAATTGAACCCGGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATA 548695 Query 60128 CTA-CCGAG 60135 ||| ||||| Sbjct 548696 CTATCCGAG 548704 >seq1 Length=3088551 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 60069 CTCGG-CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATA 60127 ||||| | |||||| |||||| ||||||||||||||||||||| ||||| ||||||||| Sbjct 2853341 CTCGGACCGGGAATTGAACCCGGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATA 2853282 Query 60128 CTA-CCGAGGATTGAA 60142 ||| |||| ||||||| Sbjct 2853281 CTATCCGA-GATTGAA 2853267 >seq34 Length=2204315 Score = 82.4 bits (90), Expect = 9e-11 Identities = 61/69 (88%), Gaps = 2/69 (3%) Strand=Plus/Plus Query 60069 CTCGG-CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATA 60127 ||||| | |||||| |||||| ||||||||||||||||||||| ||||| ||||||||| Sbjct 968588 CTCGGACCGGGAATTGAACCCGGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATA 968647 Query 60128 CTA-CCGAG 60135 ||| ||||| Sbjct 968648 CTATCCGAG 968656 >seq23 Length=2259027 Score = 82.4 bits (90), Expect = 9e-11 Identities = 61/69 (88%), Gaps = 2/69 (3%) Strand=Plus/Plus Query 60069 CTCGG-CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATA 60127 ||||| | |||||| |||||| ||||||||||||||||||||| ||||| ||||||||| Sbjct 1414974 CTCGGACCGGGAATTGAACCCGGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATA 1415033 Query 60128 CTA-CCGAG 60135 ||| ||||| Sbjct 1415034 CTATCCGAG 1415042 >seq11 Length=533729 Score = 82.4 bits (90), Expect = 9e-11 Identities = 61/69 (88%), Gaps = 2/69 (3%) Strand=Plus/Minus Query 60069 CTCGG-CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATA 60127 ||||| | |||||| |||||| ||||||||||||||||||||| ||||| ||||||||| Sbjct 457290 CTCGGACCGGGAATTGAACCCGGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATA 457231 Query 60128 CTA-CCGAG 60135 ||| ||||| Sbjct 457230 CTATCCGAG 457222 >seq7 Length=729093 Score = 82.4 bits (90), Expect = 9e-11 Identities = 61/69 (88%), Gaps = 2/69 (3%) Strand=Plus/Minus Query 60069 CTCGG-CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATA 60127 ||||| | |||||| |||||| ||||||||||||||||||||| ||||| ||||||||| Sbjct 97366 CTCGGACCGGGAATTGAACCCGGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATA 97307 Query 60128 CTA-CCGAG 60135 ||| ||||| Sbjct 97306 CTATCCGAG 97298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817071068720