Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq9 113 3e-20 seq4 105 4e-18 seq1 95.1 8e-15 >seq9 Length=614693 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| |||||||| || || || || ||||| ||||| || ||| | || Sbjct 95431 AGCACCAAATGTAAAGTCGACTCCTTTTGAATATTGTAATCGGAAAGTGTACGACCATCT 95372 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | || ||||| ||||||||||| || |||||||| || | | |||||||| Sbjct 95371 TCAAGTTGTTTGCCAGCGAAAATGAGACGTTGCTGGTCCGGAGGAATTCCTTCCTTGTCC 95312 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||||||||| | | | || ||||| | ||||| || |||| |||||||| Sbjct 95311 TGGATCTTTTGCTTGACGTTTTCAATAGAATCAGATGATTCTACTTCCAATGTGATGGTC 95252 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || |||||||| || |||||||| ||||| Sbjct 95251 TTTCCAGTGAGAGTCTTGACAAAGATTTGCAT 95220 >seq4 Length=1091430 Score = 105 bits (116), Expect = 4e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218 ||| ||||| || || | || ||| ||||| | ||| || || || ||||||||||| Sbjct 754173 GAAACCGCCACGGAGACGCAACACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTC 754114 Query 34219 GGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGAC 34278 || || ||| | || || | |||||||| ||||||||||| || ||||| || Sbjct 754113 AGAAAGAGTACGACCATCTTCAAGTTGCTTGCCAGCGAAAATGAGACGTTGCTGATCTGG 754054 Query 34279 GGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTC 34338 || | | ||||| || ||||| | ||| | || | || ||||| | ||||| Sbjct 754053 TGGGATACCTTCCTTATCTTGGATCTTGTTCTTGACATTTTCAATAGAATCAGAAGATTC 753994 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||| |||||||| ||||| || | ||| || |||||||| ||||| Sbjct 753993 AACTTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 753943 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | |||| ||| || || ||||||||||| |||| |||| | || Sbjct 753926 AGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATCT 753867 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | || |||||||| || || | || |||||||| || | | |||||||| Sbjct 753866 TCAAGTTGTTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTGTCT 753807 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| | ||| | || | || ||||| | || || || |||| || ||||| Sbjct 753806 TGGATCTTGTTCTTGACATTTTCAATAGAATCAGAAGACTCAACTTCCAAAGTAATGGTC 753747 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || | ||| || |||||||| ||||| Sbjct 753746 TTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 753715 >seq1 Length=3088551 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | |||| ||| || || || |||||||| |||| ||| | || Sbjct 606004 AGGACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCTGACAAAGTACGACCATCT 605945 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | || |||||||| || ||||| ||||||||||| || | || ||||| || Sbjct 605944 TCAAGTTGTTTGCCTGCAAAGATGAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTATCC 605885 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| | ||| | | | || ||||| | || || || |||| ||||| || Sbjct 605884 TGGATCTTGTTCTTGACGTTTTCAATAGAATCAGATGACTCAACTTCCAAAGTGATAGTC 605825 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || | ||| || |||||||||||||| Sbjct 605824 TTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 605793 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | |||| || || || ||||||||||| |||| ||| | || Sbjct 605776 AGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCTGACAAAGTACGACCATCT 605717 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | || |||||||| || ||||| || ||||| || ||| | || |||||||| Sbjct 605716 TCAAGTTGTTTGCCTGCAAAGATGAGACGTTGCTGATCTGGGGGAATGCCTTCCTTGTCT 605657 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| | ||| | | | || ||||| | || || || |||| ||||| || Sbjct 605656 TGAATCTTGTTCTTGACGTTTTCAATGGAATCAGATGACTCCACCTCCAAGGTGATAGTC 605597 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || || || ||||| ||||| Sbjct 605596 TTGCCAGTAAGGGTCTTGACGAAGATTTGCAT 605565 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34160 AATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCG 34219 || || || || || | || || ||||| | ||| ||| || || || |||||||| Sbjct 606478 AAACCACCACGAAGACGAAGGACAAGGTGAAGAGTGGATTCCTTTTGGATATTGTAGTCT 606419 Query 34220 GACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACG 34279 |||| ||| | || || | || |||||||| || || | || |||||||| Sbjct 606418 GACAAAGTACGACCATCCTCAAGTTGTTTGCCTGCAAAGATCAAGCGTTGCTGGTCTGGA 606359 Query 34280 GGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCG 34339 || | || ||||| || ||||| | ||| | || | || ||||| | || || Sbjct 606358 GGAATGCCTTCCTTATCTTGGATCTTGTTCTTGACATTCTCAATAGAATCAGATGACTCA 606299 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||| ||||| || ||||| || | ||| || |||||||||||||| Sbjct 606298 ACTTCCAAAGTGATAGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 606249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071708629440