Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1 111 1e-19 seq4 102 6e-17 >seq1 Length=3088551 Score = 111 bits (122), Expect = 1e-19 Identities = 167/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| |||| |||||| || || || ||||||||||||||||| | | Sbjct 605791 CCACCACGAAGACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCTGAC 605732 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||| | ||||||||| ||| |||| || | ||| ||||| ||| Sbjct 605731 AAAGTACGACCATCTTCAAGTTGTTTGCCTGCAAAGATGAGACGTTGCTGATCTGGGGGA 605672 Query 18219 ACGCCTTCCTTATCGGCAAT-TTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||| || ||| ||||| |||||| | | ||| | ||| | ||| Sbjct 605671 ATGCCTTCCTTGTCTTGAATCTTGTT-CTTGACGTTTTCAATGGAATCAGATGACTCCAC 605613 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAA 18332 || | |||||| | ||||| || | || || || || |||||||| || ||| Sbjct 605612 CTCCAAGGTGATAGTCTTGCCAGTAAGGGTCTTGACGAAGATTTGCATGTTGAAA 605558 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| |||| |||||| || ||||| ||||| || |||||||| | | Sbjct 606019 CCACCACGAAGACGAAGGACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCTGAC 605960 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||| | ||||||||| ||| |||| || | || || || || Sbjct 605959 AAAGTACGACCATCTTCAAGTTGTTTGCCTGCAAAGATGAGACGCTGCTGGTCTGGAGGA 605900 Query 18219 ACGCCTTCCTTAT-CGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| | | | ||||| |||||| | | ||| || ||| | ||| Sbjct 605899 ATGCCTTCCTTATCCTGGATCTTGTT-CTTGACGTTTTCAATAGAATCAGATGACTCAAC 605841 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | ||||| | ||||| ||||| || || ||||| || ||||| Sbjct 605840 TTCCAAAGTGATAGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 605793 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| |||| |||||| || || || |||||||||||||| || | | Sbjct 606247 CCACCACGAAGACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCAGAC 606188 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||| | ||| || || ||| |||| | | ||| || || || Sbjct 606187 AAAGTACGACCATCTTCGAGTTGCTTTCCTGCAAAGATCAAGCGTTGCTGGTCTGGAGGA 606128 Query 18219 ACGCCTTCCTTATC-GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||||||| | | ||||| |||||| | ||| || ||| | ||| Sbjct 606127 ATGCCTTCCTTATCTTGGATCTTGTT-CTTGACATTCTCAATAGAATCAGATGACTCAAC 606069 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | ||||| | ||||| ||||| || || ||||| || ||||| Sbjct 606068 TTCCAAAGTGATAGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 606021 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | |||||| || ||||| ||||| || |||||||| | | Sbjct 606475 CCACCACGAAGACGAAGGACAAGGTGAAGAGTGGATTCCTTTTGGATATTGTAGTCTGAC 606416 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||| || | ||||||||| ||| |||| | | ||| || || || Sbjct 606415 AAAGTACGACCATCCTCAAGTTGTTTGCCTGCAAAGATCAAGCGTTGCTGGTCTGGAGGA 606356 Query 18219 ACGCCTTCCTTATC-GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||||||| | | ||||| |||||| | ||| || ||| | ||| Sbjct 606355 ATGCCTTCCTTATCTTGGATCTTGTT-CTTGACATTCTCAATAGAATCAGATGACTCAAC 606297 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | ||||| | ||||| ||||| || || ||||| || ||||| Sbjct 606296 TTCCAAAGTGATAGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 606249 >seq4 Length=1091430 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| |||| |||||| || || || ||||| |||||||| || | | Sbjct 753485 CCACCACGAAGACGAAGCACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAC 753426 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||| | ||||||||| ||| |||| | | ||| || || || Sbjct 753425 AAAGTACGACCATCTTCAAGTTGTTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAGGA 753366 Query 18219 ACGCCTTCCTTATC-GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||||||| | | ||||| |||||| | | ||| | ||| | |||| Sbjct 753365 ATGCCTTCCTTATCTTGGATCTTGTT-CTTGACGTTTTCAATGGAATCAGAAGACTCGAC 753307 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | ||||| | |||||||| | ||| || ||||| |||||||| Sbjct 753306 TTCCAAAGTGATAGTCTTGCCGGTAAGTGTCTTGACAAAGATTTGCAT 753259 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| |||| |||||| || ||||| ||||| ||||||||||| | | Sbjct 753941 CCACCACGAAGACGAAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 753882 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| | ||||||||| ||| |||| | | ||| || || || Sbjct 753881 AAAGTACGGCCATCTTCAAGTTGTTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAGGA 753822 Query 18219 ACGCCTTCCTTATC-GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || | | ||||| |||||| | | ||| || ||| | ||| Sbjct 753821 ATACCTTCCTTGTCTTGGATCTTGTT-CTTGACATTTTCAATAGAATCAGAAGACTCAAC 753763 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || ||| | ||||| ||||| || || ||||| |||||||| Sbjct 753762 TTCCAAAGTAATGGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 753715 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 18122 GTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTG 18181 |||||| || || || ||||| ||||||||||| | | || || |||||| | ||| Sbjct 754146 GTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGACCATCTTCAAGTTG 754087 Query 18182 TTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC-GGCAATTT 18240 ||||| || | || || | ||| ||||| || | ||||||||||| | | || Sbjct 754086 CTTGCCAGCGAAAATGAGACGTTGCTGATCTGGTGGGATACCTTCCTTATCTTGGATCTT 754027 Query 18241 GTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGG 18300 ||| |||||| | | ||| || ||| | || ||| | |||||| | ||||| | Sbjct 754026 GTT-CTTGACATTTTCAATAGAATCAGAAGATTCAACTTCCAAAGTGATGGTCTTGCCAG 753968 Query 18301 TCAATGTTTTTACAAAAATTTGCAT 18325 |||| || || ||||| |||||||| Sbjct 753967 TCAAAGTCTTGACAAAGATTTGCAT 753943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343657879130