Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq2 154 3e-32 seq45 138 2e-27 seq73 91.5 3e-13 >seq2 Length=1153633 Score = 154 bits (170), Expect = 3e-32 Identities = 310/459 (68%), Gaps = 3/459 (1%) Strand=Plus/Plus Query 101902 TTTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATT 101961 ||| || |||| | ||||| || |||||||| ||||| ||||||||| |||| | || Sbjct 770395 TTTTGCTGAACGTCTAGTTGCATTCGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTT 770454 Query 101962 CGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021 || || || || ||| |||| || | || | |||| ||||| || | | || || Sbjct 770455 TGCTTCTATCTTTTGGCTCAAAAAGCGTGGATTGATGCCAGGTCTTACATTCAGTAACGA 770514 Query 102022 GTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGG 102081 | | ||||| | || ||||| | ||| ||| |||||||| | |||| | Sbjct 770515 GCTTATTTCACGTGATGAAGGATTACATACCGATTTTGCATGTCTCTTGTTTTCTCA--- 770571 Query 102082 TTTTGTTGATACCCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAAT 102141 | || | || ||||| || | || | ||| || | | |||||| || || Sbjct 770572 TCTTCGTCATCAGCCATCTCATCAACGTATCCGTGATATCATTATTGAAGCTGTTAATAT 770631 Query 102142 TGAACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTT 102201 || |||||||| | |||| | | | |||||| || | || ||||| |||| | Sbjct 770632 CGAGCAAGAATTCTTAACAGATGCTTTACCTGTTTCTTTGATTGGTATGAATGCCAAGCT 770691 Query 102202 GATGAGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAA 102261 ||| | |||||||||||||||||||| ||| || ||||| | | || |||| || Sbjct 770692 CATGTGTCAGTACATTGAATTTGTGGCGGATCGTCTTTTGGTGGCTCTTGGCGTAGACAA 770751 Query 102262 GCACTATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGAC 102321 ||| ||| || ||||| ||||| || ||||||| ||||| || || ||||| Sbjct 770752 GCATTATCATTCAACCAATCCCTTTGACTTTATGGACATGATTTCTCTTCAGGGCAAGAC 770811 Query 102322 CAACTTTTTTGAAAAGAGAGTCGCCGAGTATCAACGTGC 102360 |||||| ||||| ||| |||| | || ||||||||||| Sbjct 770812 CAACTTCTTTGAGAAGCGAGTGTCAGATTATCAACGTGC 770850 >seq45 Length=1879501 Score = 138 bits (152), Expect = 2e-27 Identities = 338/511 (66%), Gaps = 5/511 (1%) Strand=Plus/Minus Query 101851 CATCAAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACGATTTGGCGGA 101910 |||||||||||| | | ||||| | || ||||| | |||| || || || Sbjct 1418585 CATCAAGAAGAAAGCTGACTGGGCCTTCAAGTGGATTTCATCCAATGGTTCCTTTGCTGA 1418526 Query 101911 ACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCAT 101970 || ||||||| |||||||| || ||||| ||||||||| ||| | || || ||||| Sbjct 1418525 ACGTCTTGTTGCTTTTGCTGCTGTAGAAGGCATCTTCTTTTCTGGCTCTTTTGCTTCCAT 1418466 Query 101971 TTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTC 102030 || ||| ||||||| | ||| || |||| || | || | ||||||| ||||||| Sbjct 1418465 CTTTTGGCTCAAGAAACGTGGTCTTATGCCAGGCTTGACTTTTAGCAATGAGCTCATTTC 1418406 Query 102031 TAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGA 102090 | || ||||||||||| || ||||| || |||| || | |||| | Sbjct 1418405 CCGTGATGAAGGTCTTCACACTGATTTTGCTTGTTTGCTCTTTTCTCA----TTTGCGCA 1418350 Query 102091 TAC-CCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAG 102149 | ||||| ||| | ||||||| || | |||||| || |||||||||| Sbjct 1418349 AGCAACCATCCCATGAACGTATTCTTGGTATCATTGTTGAAGCTGTTGCTATTGAACAAG 1418290 Query 102150 AATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCC 102209 |||| | || | | | || || || | | || ||||| |||| | ||| | | Sbjct 1418289 AATTCTTGACTGATGCTCTTCCCGTGTCCCTGATTGGTATGAATGCCAAGCTCATGTGTC 1418230 Query 102210 AGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATA 102269 | |||||||||||||| || ||| | | || | |||| || | ||||| || | Sbjct 1418229 AATACATTGAATTTGTTGCCGATCGCTTGCTTGTCGCCTTGGGTCTCAACAAGCATTACA 1418170 Query 102270 ATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTT 102329 ||| |||||| || || || ||||||| || || || | || |||||||||| Sbjct 1418169 ATGCTACCAATCCATTTGACTTTATGGACATGATCTCTCTTCAAGGCAAAACCAACTTTT 1418110 Query 102330 TTGAAAAGAGAGTCGCCGAGTATCAACGTGC 102360 | |||||| | || | || || |||||||| Sbjct 1418109 TCGAAAAGCGTGTATCTGATTACCAACGTGC 1418079 >seq73 Length=1220876 Score = 91.5 bits (100), Expect = 3e-13 Identities = 88/112 (79%), Gaps = 6/112 (5%) Strand=Plus/Minus Query 93608 TATACATGTTGGACGTTAAAGGCTCAAAGGATTCAGAGTTG---CCCAGGATCTGTGCAG 93664 |||||| |||||| || |||| |||||| |||| |||| || |||||||||| | Sbjct 415618 TATACAAGTTGGATGTGTAAGGTTCAAAGCATTC---GTTGAAACCAAGGATCTGTGATG 415562 Query 93665 TGGATGCAGTAGGCATGGGAGCAACAAACATTGAATTGTGAACACCATACTT 93716 |||||||||||||||| ||||| || || | ||||||| | | ||||| ||| Sbjct 415561 TGGATGCAGTAGGCATAGGAGCTACCAAAAGTGAATTGCGTAAACCATGCTT 415510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583061750670