Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2 138 2e-27 seq45 109 8e-19 seq73 107 3e-18 >seq2 Length=1153633 Score = 138 bits (152), Expect = 2e-27 Identities = 295/433 (68%), Gaps = 17/433 (4%) Strand=Plus/Plus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 || || |||||||| || || || |||||||||||||| ||| |||||| | |||||| Sbjct 770408 CTAGTTGCATTCGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCTTCTATCTTT 770467 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546 |||||||| ||||| ||| | ||||| || || || |||||||||| |||| || || Sbjct 770468 TGGCTCAAAAAGCGTGGATTGATGCCAGGTCTTACATTCAGTAACGAGCTTATTTCACGT 770527 Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTCTACTG-TTTCGCAACTATCTGCGTCCCGA 125605 || || || |||| || ||||| ||| || |||| | |||| |||| | Sbjct 770528 GATGAAGGATTACATACCGATTTTGCATGTCTCTTGTTTTCTC----ATCTTCGTCATCA 770583 Query 125606 GTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACA 125665 | || | || | | | | || || | |||| | || || || | || || || Sbjct 770584 G-CCATCT-CATCAACGTATCCGTGAT-ATCATT---ATTGAAGCTGTTAATATCGAGCA 770637 Query 125666 AGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTG 125725 ||| || |||| || | |||| || ||||||| ||||| |||||| ||||| Sbjct 770638 AGAATTCTTAACAGATGCTTTACCTGTTTCTTTGATTGGTATGAATGCCAAGCTCATGTG 770697 Query 125726 CGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC---CGCAAGAT 125782 ||||||| || |||||||| |||||||| || | | ||||| |||| Sbjct 770698 TCAGTACATTGAATTTGTGGCGGATCGTCTTTTG---GTGGCTCTTGGCGTAGACAAGCA 770754 Query 125783 TTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAA 125842 ||| | | | ||||||||||| || ||| || || || || |||| |||||||| Sbjct 770755 TTATCATTCAACCAATCCCTTTGACTTTATGGACATGATTTCTCTTCAGGGCAAGACCAA 770814 Query 125843 CTTTTTCGAGAAG 125855 ||| || |||||| Sbjct 770815 CTTCTTTGAGAAG 770827 Score = 98.7 bits (108), Expect = 1e-15 Identities = 216/321 (67%), Gaps = 2/321 (1%) Strand=Plus/Plus Query 125031 TACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTG 125090 |||||||| || | || || || ||||| | || ||| | ||||| |||||||||| Sbjct 769953 TACAAAAAAGCAGAAGCTTCTTTCTGGACAGCAGAGGAGATTGATCTTTCCAAGGACCAA 770012 Query 125091 TACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCC 125150 |||| ||||||| |||| | ||| || ||||| || | | | || Sbjct 770013 AACGACTGGGAGAACAAGATGACCAAGGATGAACGTTTCTTTATCTCTCGTGTGCTTGCT 770072 Query 125151 TTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGA 125209 ||||||||| | || ||||| |||||||| || ||||| || || || |||| | || Sbjct 770073 TTCTTTGCCAGTTCGGATGGTATCGTCAATGAGAATCTTGTAGAG-CGTTTCTGCAACGA 770131 Query 125210 GTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCA 125269 | ||| | || | |||||| || |||||||| ||||||||||| ||| | || Sbjct 770132 AGTCCAAATTGCTGAAGCCAAGTGCTTCTATGGATTCCAGATCATGATTGAAAACATTCA 770191 Query 125270 CTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACAT 125329 ||| || | ||| | ||||||||| || || ||||| ||| ||| | || Sbjct 770192 CTCTGAGACTTACAGTCTTTTGATTGACACTTATATCAAGGATCCTCAAGAAAAAGAAAT 770251 Query 125330 GCTCTTTAACGCAATCGACAC 125350 ||||||| | || || || || Sbjct 770252 GCTCTTTGATGCTATTGAAAC 770272 >seq45 Length=1879501 Score = 109 bits (120), Expect = 8e-19 Identities = 289/435 (66%), Gaps = 21/435 (5%) Strand=Plus/Minus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 || || || || || || ||||| |||||||||||||| || |||||| |||||||| Sbjct 1418521 CTTGTTGCTTTTGCTGCTGTAGAAGGCATCTTCTTTTCTGGCTCTTTTGCTTCCATCTTT 1418462 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546 ||||||||||| || || || ||||| || |||| || || ||| | || || || Sbjct 1418461 TGGCTCAAGAAACGTGGTCTTATGCCAGGCTTGACTTTTAGCAATGAGCTCATTTCCCGT 1418402 Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTCTACT-GTTTCGCAACTATCTGCGTCCCGA 125605 || || || || ||| ||| ||||| | | || |||| | || |||| | | Sbjct 1418401 GATGAAGGTCTTCACACTGATTTTGCTTGTTTGCTCTTTTCTC----ATTTGCG---CAA 1418349 Query 125606 GTGCAGATCCAGCGATGAAAAGGTCATC-----AACATTGTAACCGATGCCGTGAGGATA 125660 ||| | | | ||| || || || | |||||| || || || || Sbjct 1418348 --GCA-ACCATCCCATG--AACGTATTCTTGGTATCATTGT---TGAAGCTGTTGCTATT 1418297 Query 125661 GAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTA 125720 |||||||| || | || || | || || || | ||||||| ||||| |||||| Sbjct 1418296 GAACAAGAATTCTTGACTGATGCTCTTCCCGTGTCCCTGATTGGTATGAATGCCAAGCTC 1418237 Query 125721 ATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAG 125780 ||||| | ||||| || ||||| || ||||| | || || ||| | | |||| Sbjct 1418236 ATGTGTCAATACATTGAATTTGTTGCCGATCGCTTGCTTGTCGCCTTGGGTCTCAACAAG 1418177 Query 125781 ATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACC 125840 |||||| || | ||||| ||||| || ||| || || || || | || || ||| Sbjct 1418176 CATTACAATGCTACCAATCCATTTGACTTTATGGACATGATCTCTCTTCAAGGCAAAACC 1418117 Query 125841 AACTTTTTCGAGAAG 125855 ||||||||||| ||| Sbjct 1418116 AACTTTTTCGAAAAG 1418102 Score = 102 bits (112), Expect = 1e-16 Identities = 224/334 (67%), Gaps = 4/334 (1%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| || | ||||| || ||| | || || || ||||| | ||| ||| | || || Sbjct 1419005 ATTTGGCAATTCTACAAGAAAGCTGAAGCTTCATTCTGGACTGCCGAGGAGATTGACCTT 1418946 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||||| |||| ||||||| |||| | ||| || ||||| || Sbjct 1418945 TCCAAGGACCAAAACGACTGGGAGAACAAAATGACCAAGGATGAACGTTTCTTTATCTCT 1418886 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 | | | || ||||||||| | || ||||| |||||||| || ||||| || || Sbjct 1418885 CGTGTGCTTGCTTTCTTTGCCAGTTCGGATGGTATCGTCAATGAGAATCTTGTGGAGCGT 1418826 Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258 |||| | || | ||| | || | ||| || || |||||||||||||||||| Sbjct 1418825 TTCTGCAACGAAGTCCAAATTGCTGAAGCCAAGTGTTTCTATGGATTCCAAATCATGATT 1418766 Query 125259 GAGAACGTGCACTCGGAAA--TGTACTCTACACTGATTGACATGTACATTCGCGATCCGC 125316 || ||| | ||||| || | | || ||| ||||||||| || || ||| | | Sbjct 1418765 GAAAACATCCACTCTGAGACTTATAGTCT--TTTGATTGACACTTATATCAAGGATTCTC 1418708 Query 125317 AACGTAAACACATGCTCTTTAACGCAATCGACAC 125350 || || | ||||||||| |||| || || || Sbjct 1418707 AAGAAAAGGAAATGCTCTTTGACGCGATTGAAAC 1418674 >seq73 Length=1220876 Score = 107 bits (118), Expect = 3e-18 Identities = 179/254 (70%), Gaps = 6/254 (2%) Strand=Plus/Plus Query 97975 TGATCATGTACAACAATGGGTCCATTCAAAACATTACCATCATCCCGGAAGAGTTGCGCA 98034 ||||||||| |||| || || |||||| | | ||||| || || || ||| | Sbjct 415715 TGATCATGTCAGACAACGGCTCTATTCAACGTGTGCCTATCATTCCTGATGATTTGA--A 415772 Query 98035 GAATCT--ACAAGACTGTCTGGGAGATTCCGACCAAGACGC-TGATCGATATGGCTGCCG 98091 |||||| |||||||||| ||||| | || || | | | | || ||||||||||| | Sbjct 415773 GAATCTTTACAAGACTGTTTGGGAACTACC-ACAACGTGTCATCATTGATATGGCTGCTG 415831 Query 98092 ACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCT 98151 | | |||| || ||||| ||||||||| || ||| | | | ||| ||| |||| || Sbjct 415832 ATCGTGGTGCCTTTATTGATCAGAGTCAAAGTTTGAATATCTTCATTGGCGAACCCAACT 415891 Query 98152 ACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGT 98211 | | || || |||||||| | |||||| ||||| |||||||| ||||||| Sbjct 415892 TTGGCAAGCTCACAAGTATGCACTTTTATGGATGGAAAAAGGGGCTCAAGACCGGCATGT 415951 Query 98212 ACTATCTGAGAACA 98225 ||||| ||||| || Sbjct 415952 ACTATTTGAGATCA 415965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058514520240