Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq9 122 6e-23 seq4 109 4e-19 >seq9 Length=614693 Score = 122 bits (134), Expect = 6e-23 Identities = 176/247 (71%), Gaps = 1/247 (0%) Strand=Plus/Minus Query 15118 ACATCAGTAACCATGTCTGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTT 15177 |||||| | | | |||| || || | ||| | ||| || || || | ||||| ||||| Sbjct 95692 ACATCA-TGATCTTGTCCACCGCCACGCAAGCGTAATACCAAGTGCAACGTGGATTCTTT 95634 Query 15178 TTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAA 15237 ||| ||||||||||| ||| | | ||||||| | |||||||||||| | ||||| Sbjct 95633 TTGGATGTTGTAATCAGAAAGAGTACGGCCGTCTTCAAGCTGTTTGCCAGCGAAAATCAA 95574 Query 15238 ACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTAT 15297 |||||| || || ||||| ||||| ||||| ||| ||| |||| ||| | || || Sbjct 95573 ACGTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGAATCTTGTTCTTGACATTCTCAAT 95514 Query 15298 GGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAAT 15357 | |||| ||| || || | || || || || || || ||||| || ||||| || Sbjct 95513 AGAATCGGACGATTCCACTTCAAGTGTGATAGTCTTGCCAGTAAGAGTCTTGACAAAGAT 95454 Query 15358 TTGCATA 15364 ||||||| Sbjct 95453 TTGCATA 95447 Score = 100 bits (110), Expect = 2e-16 Identities = 158/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| | || || || ||||| || ||||||||| || | | | ||||| Sbjct 95428 ACCAAATGTAAAGTCGACTCCTTTTGAATATTGTAATCGGAAAGTGTACGACCATCTTCA 95369 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||||||||||||| | || | |||||| ||||| ||||||||||| ||||| Sbjct 95368 AGTTGTTTGCCAGCGAAAATGAGACGTTGCTGGTCCGGAGGAATTCCTTCCTTGTCCTGG 95309 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| || |||| || | ||| |||||| || || || ||||| || Sbjct 95308 ATCTTTTGCTTGACGTTTTCAATAGAATCAGATGATTCTACTTCCAATGTGATGGTCTTT 95249 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAAAAT 15378 || || ||||| || ||||| |||||||| | || |||||||| Sbjct 95248 CCAGTGAGAGTCTTGACAAAGATTTGCAT-TGTG-TAATAAAAT 95207 >seq4 Length=1091430 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||| || || || ||||| |||||||| || | | | | | ||||| Sbjct 753923 ACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATCTTCA 753864 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||||||||| || | ||||||||||| ||||| ||||| ||||| ||||| Sbjct 753863 AGTTGTTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGG 753804 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| |||| ||| |||| || | ||| | || || || || |||||||| || Sbjct 753803 ATCTTGTTCTTGACATTTTCAATAGAATCAGAAGACTCAACTTCCAAAGTAATGGTCTTG 753744 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| ||| || ||||| ||||||||| Sbjct 753743 CCAGTCAAAGTCTTGACAAAGATTTGCATA 753714 Score = 98.7 bits (108), Expect = 7e-16 Identities = 157/224 (70%), Gaps = 1/224 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||| ||||| || ||||| ||||||||||| | | | | | ||||| Sbjct 753467 ACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTACGACCATCTTCA 753408 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||||||||| || | ||||||||||| ||||| ||||| ||||| || || Sbjct 753407 AGTTGTTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAGGAATGCCTTCCTTATCTTGG 753348 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| |||| || |||| |||| ||| | || || || || || || || || Sbjct 753347 ATCTTGTTCTTGACGTTTTCAATGGAATCAGAAGACTCGACTTCCAAAGTGATAGTCTTG 753288 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT-ATTTGAAAATAAAA 15377 || || || || || ||||| |||||||| | | ||| ||||| Sbjct 753287 CCGGTAAGTGTCTTGACAAAGATTTGCATGGTGTAAAAGTAAAA 753244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362178873359634