Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq4 102 6e-17 seq1 102 6e-17 seq9 100 2e-16 >seq4 Length=1091430 Score = 102 bits (112), Expect = 6e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 |||||| || || ||| ||| ||||| || || ||||| || ||| |||| || Sbjct 753468 CACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTACGACCATCTTC 753409 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 | |||||| |||||||| ||||| ||||||||||| |||| | ||||| |||||| Sbjct 753408 AAGTTGTTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAGGAATGCCTTCCTTATCTTG 753349 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 || || | ||||| | ||| | ||| | | ||| || || | || || || || Sbjct 753348 GATCTTGTTCTTGACGTTTTCAATGGAATCAGAAGACTCGACTTCCAAAGTGATAGTCTT 753289 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 ||||| | ||||| ||||| ||||||||| Sbjct 753288 GCCGGTAAGTGTCTTGACAAAGATTTGCATG 753258 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 |||||| || || || || ||||| || || || || || ||| |||| || Sbjct 753924 CACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATCTTC 753865 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 | |||||| |||||||| ||||| ||||||||||| |||| | |||||| || ||| Sbjct 753864 AAGTTGTTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTGTCTTG 753805 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 || || | ||||| | ||| || ||| | | ||| || || | ||||| || || Sbjct 753804 GATCTTGTTCTTGACATTTTCAATAGAATCAGAAGACTCAACTTCCAAAGTAATGGTCTT 753745 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || |||||||| ||||| |||||||| Sbjct 753744 GCCAGTCAAAGTCTTGACAAAGATTTGCAT 753715 >seq1 Length=3088551 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||| || || || ||| |||||||| || ||||| || ||| |||| || Sbjct 606229 ACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCAGACAAAGTACGACCATCTTCG 606170 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | ||| ||||||||||| ||||| ||||||||||| |||| | ||||| |||||| Sbjct 606169 AGTTGCTTTCCTGCAAAGATCAAGCGTTGCTGGTCTGGAGGAATGCCTTCCTTATCTTGG 606110 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || || | ||||| | ||| || ||| | | ||| || || | || || || || Sbjct 606109 ATCTTGTTCTTGACATTCTCAATAGAATCAGATGACTCAACTTCCAAAGTGATAGTCTTG 606050 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || |||||||| ||||| || ||||| Sbjct 606049 CCAGTCAAAGTCTTGACAAAGATCTGCAT 606021 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 || ||||| ||||| || || || ||| |||| || | |||||| |||||||| Sbjct 606439 TCCTTTTGGATATTGTAGTCTGACAAAGTACGACCATCCTCAAGTTGTTTGCCTGCAAAG 606380 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| ||||||||||| |||| | ||||| |||||| || || | ||||| | Sbjct 606379 ATCAAGCGTTGCTGGTCTGGAGGAATGCCTTCCTTATCTTGGATCTTGTTCTTGACATTC 606320 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| || ||| | | ||| || || | || || || || || || |||||||| ||| Sbjct 606319 TCAATAGAATCAGATGACTCAACTTCCAAAGTGATAGTCTTGCCAGTCAAAGTCTTGACA 606260 Query 44111 AATATTTGCAT 44121 || || ||||| Sbjct 606259 AAGATCTGCAT 606249 >seq9 Length=614693 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||||||||||| || ||| ||||||||||| |||||| | | ||| |||| || Sbjct 95429 CACCAAATGTAAAGTCGACTCCTTTTGAATATTGTAATCGGAAAGTGTACGACCATCTTC 95370 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 | |||||| || || || || | |||||||||||| |||| | ||||| || || Sbjct 95369 AAGTTGTTTGCCAGCGAAAATGAGACGTTGCTGGTCCGGAGGAATTCCTTCCTTGTCCTG 95310 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 || ||||| ||||| | ||| || ||| | | || || || | || || || || Sbjct 95309 GATCTTTTGCTTGACGTTTTCAATAGAATCAGATGATTCTACTTCCAATGTGATGGTCTT 95250 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || | |||||| ||||| |||||||| Sbjct 95249 TCCAGTGAGAGTCTTGACAAAGATTTGCAT 95220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354777280034952