Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2 129 5e-25 >seq2 Length=1153633 Score = 129 bits (142), Expect = 5e-25 Identities = 292/434 (67%), Gaps = 4/434 (1%) Strand=Plus/Minus Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921 |||||| || |||| || ||||| ||||| || || || | | ||||| | || Sbjct 770845 TTGATAATCTGACACTCGCTTCTCAAAGAAGTTGGTCTTGCCCTGAAGAGAAATCATGTC 770786 Query 12922 CATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTT-TACACCCTAATTCTAGTAACA 12980 |||||| || || ||||| | ||| ||| | || | ||| || | | | || | Sbjct 770785 CATAAAGTCAAAGGGATTGGTTGAATGATAATGCTTGTCTACGCCAAGAGCC-ACCAAAA 770727 Query 12981 ATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATT 13040 | || || ||||| || |||||||| ||| | | ||||| || || || Sbjct 770726 GACGATCCGCCACAAATTCAATGTACTGACACATGAGCTTGGCATTCATACCAATCAAAG 770667 Query 13041 TTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGT 13100 ||||| | ||| |||||||| || | || || |||| ||| ||||| |||| || | Sbjct 770666 AAACAGGTAAAGCATCTGTTAAGAATTCTTGCTCGATATTAACAGCTTCAATAATGATAT 770607 Query 13101 CTCTTATTACGTTCTCTA-ATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAA 13159 | | || ||||| | |||| ||| ||||| ||||| | |||||||||| Sbjct 770606 CACGGAT-ACGTTGATGAGATGGCTGATGACGAAGATGAGAAAACAAGAGACATGCAAAA 770548 Query 13160 TCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATA 13219 || || ||||||||||| | || |||||||| ||||| ||||| ||||| Sbjct 770547 TCGGTATGTAATCCTTCATCACGTGAAATAAGCTCGTTACTGAATGTAAGACCTGGCATC 770488 Query 13220 AGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCA 13279 | || || ||||| | |||||| |||| |||||| ||||| ||||| || || ||||| Sbjct 770487 AATCCACGCTTTTTGAGCCAAAAGATAGAAGCAAAAGAACCAGAAAAGAAGATGCCTTCC 770428 Query 13280 ACTGCTGCAAACGC 13293 ||||| || || || Sbjct 770427 ACTGCAGCGAATGC 770414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430982011307748