Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq9 138 3e-27 seq2 125 2e-23 seq45 111 4e-19 >seq9 Length=614693 Score = 138 bits (152), Expect = 3e-27 Identities = 162/218 (74%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||| ||| ||| | || || || |||||||| || || || || ||||| ||||| | Sbjct 95664 AGCGTAA-TACCAAGTGCAACGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGG 95606 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 |||||||| || ||||| ||||| ||||| | | || ||||||||||| || ||||| Sbjct 95605 CCGTCTTCAAGCTGTTTGCCAGCGAAAATCAAACGTTGCTGATCAGGAGGAATACCTTCC 95546 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || || |||||||| || ||||| || | | |||| | ||| || || ||||| Sbjct 95545 TTGTCTTGAATCTTGTTCTTGACATTCTCAATAGAATCGGACGATTCCACTTCAAGTGTG 95486 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| |||||||| || || ||||| || ||||| Sbjct 95485 ATAGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 95448 >seq2 Length=1153633 Score = 125 bits (138), Expect = 2e-23 Identities = 211/299 (71%), Gaps = 6/299 (2%) Strand=Plus/Plus Query 268745 TACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTA 268804 |||||| | || | |||||||| ||||| | ||| || | ||||| || | ||| | Sbjct 769953 TACAAAAAAGCAGAAGCTTCTTTCTGGACAGCAGAGGAGATTGATCTTTCCAAGGACCAA 770012 Query 268805 ATAGATTGGAAAAATTTAAA-ACCA--GAAGAAAGAAGATTTATATCTTATATTCTTGCG 268861 | || ||| | || | |||| || ||| | ||||| ||| | | ||||| Sbjct 770013 AACGACTGGGAGAACAAGATGACCAAGGATGAACGTTTCTTTATCTCTCGTGTGCTTGCT 770072 Query 268862 TTTTTTGC-AGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGA 268920 || ||||| |||| | ||||||||||| || || ||||| |||||| ||||| | || Sbjct 770073 TTCTTTGCCAGTTCG-GATGGTATCGTCAATGAGAATCTTGTAGAGCGTTTCTGCAACGA 770131 Query 268921 GGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCA 268980 || || ||| ||||||||| || || || ||||||||||| || ||||| ||||| Sbjct 770132 AGTCCAAATTGCTGAAGCCAAGTGCTTCTATGGATTCCAGATCATGATTGAAAACATTCA 770191 Query 268981 TTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGAT-AACAACGAAAAGAAA 269038 || |||| |||||||| || || || |||||||| | ||| ||| |||||||| Sbjct 770192 CTCTGAGACTTACAGTCTTTTGATTGACACTTATATCAAGGATCCTCAAGAAAAAGAAA 770250 >seq45 Length=1879501 Score = 111 bits (122), Expect = 4e-19 Identities = 284/428 (66%), Gaps = 7/428 (2%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||||||||| ||||||||||| || |||||||| || |||||||| | ||||||||| Sbjct 1418518 GTTGCTTTTGCTGCTGTAGAAGGCATCTTCTTTTCTGGCTCTTTTGCTTCCATCTTTTGG 1418459 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 | |||||| | || ||||||||||| || ||||| || || | || | | || Sbjct 1418458 CTCAAGAAACGTGGTCTTATGCCAGGCTTGACTTTTAGCAATGAGCTCATTTCCCGTGAT 1418399 Query 269258 GAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTACTAATTATCTTTCACACAAACCT 269317 |||||| | ||| || || |||||||| | ||| || ||| | || | |||| Sbjct 1418398 GAAGGTCTTCACACTGATTTTGCTTGTTTGCTCTTTTCTCATTTGC--GCA-AGCAACCA 1418342 Query 269318 TCTCAAGATAGAGTATAC--GAAATTATAGATTCAGCTGTTTCTGTAGAAACAGAATTTC 269375 || || | | |||| | | || || | | ||||||| || | ||| |||||| Sbjct 1418341 TCCCATG--AACGTATTCTTGGTATCATTGTTGAAGCTGTTGCTATTGAACAAGAATTCT 1418284 Query 269376 TAACGGAAGCTCTATCTATCGATCTTATCGGTATGAATAGCAAATCGATGATAGAATATA 269435 | || || ||||| | | || || ||||||||| ||| ||| |||| | Sbjct 1418283 TGACTGATGCTCTTCCCGTGTCCCTGATTGGTATGAATGCCAAGCTCATGTGTCAATACA 1418224 Query 269436 TTAAGTTCGTATCTGATAGATTGCTGGTGTCTTTAGGGTTTAGTAAAAAATATAACGTTG 269495 || | || || | ||| | ||||| || | || || | | || | || || | | Sbjct 1418223 TTGAATTTGTTGCCGATCGCTTGCTTGTCGCCTTGGGTCTCAACAAGCATTACAATGCTA 1418164 Query 269496 AAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTCGAGA 269555 ||||| ||| |||||||| | || || | |||| || | || || ||||| | Sbjct 1418163 CCAATCCATTTGACTTTATGGACATGATCTCTCTTCAAGGCAAAACCAACTTTTTCGAAA 1418104 Query 269556 AGCGGGTA 269563 |||| ||| Sbjct 1418103 AGCGTGTA 1418096 Score = 107 bits (118), Expect = 4e-18 Identities = 150/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 268841 TTTATATCTTATATTCTTGCGTTTTTTGC-AGTTAGTGATGGTATCGTTAACGAAAATCT 268899 ||||| ||| | | ||||| || ||||| |||| | ||||||||||| || || ||||| Sbjct 1418894 TTTATCTCTCGTGTGCTTGCTTTCTTTGCCAGTTCG-GATGGTATCGTCAATGAGAATCT 1418836 Query 268900 AGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCA 268959 || ||| ||||| | || || || ||| ||||||||| ||||| || |||||||| Sbjct 1418835 TGTGGAGCGTTTCTGCAACGAAGTCCAAATTGCTGAAGCCAAGTGTTTCTATGGATTCCA 1418776 Query 268960 GATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGA 269019 || || ||||| || || || |||| || ||||| || || || |||||||| | Sbjct 1418775 AATCATGATTGAAAACATCCACTCTGAGACTTATAGTCTTTTGATTGACACTTATATCAA 1418716 Query 269020 TGATAACAACGAAAAGAAAAGACTATTT 269047 ||| | |||||| ||| || ||| Sbjct 1418715 GGATTCTCAAGAAAAGGAAATGCTCTTT 1418688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397308330392