Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq9 113 4e-20 seq4 109 5e-19 seq1 98.7 9e-16 >seq9 Length=614693 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || | ||| || || ||||||||||| || ||||| ||||| | ||| ||||| Sbjct 95674 CCGCCACGCAAGCGTAATACCAAGTGCAACGTGGATTCTTTTTGGATGTTGTAATCAGAA 95615 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | || || |||||||| || | || || || | ||||||||| |||||| Sbjct 95614 AGAGTACGGCCGTCTTCAAGCTGTTTGCCAGCGAAAATCAAACGTTGCTGATCAGGAGGA 95555 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| ||||| | ||| || |||||| | | || || | || || Sbjct 95554 ATACCTTCCTTGTCTTGAATCTTGTTCTTGACATTCTCAATAGAATCGGACGATTCCACT 95495 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| ||||| || || ||||||||||| || |||||||| ||||| Sbjct 95494 TCAAGTGTGATAGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 95448 >seq4 Length=1091430 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | ||||||||||||||| | ||| || || || ||| | ||| || Sbjct 753924 CACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATCTTC 753865 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || ||||| || ||||||| || | |||||| ||||||||||||||||| ||||| | Sbjct 753864 AAGTTGTTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTGTCTTG 753805 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || |||||| | | || |||| || || || | || ||||| || Sbjct 753804 GATCTTGTTCTTGACATTTTCAATAGAATCAGAAGACTCAACTTCCAAAGTAATGGTCTT 753745 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | ||| || |||||||| ||||| Sbjct 753744 GCCAGTCAAAGTCTTGACAAAGATTTGCAT 753715 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | ||||||||||||||| | ||| ||||| || ||| | ||| || Sbjct 753696 CACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGACAAAGTACGGCCATCTTC 753637 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || || || || | ||| || | | |||||| ||||||||||||||||| || || | Sbjct 753636 AAGTTGCTTGCCACGAAAAATGAGACGTTGCTGGTCTGGAGGAATACCTTCCTTATCTTG 753577 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||| ||| | | || |||| | || || || | |||||||| || Sbjct 753576 GATCTTATTCTTAACGTTTTCAATAGAATCAGAGGATTCAACTTCCAAAGTGATGGTCTT 753517 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | ||| || |||||||| ||||| Sbjct 753516 GCCAGTCAAAGTCTTGACAAAGATTTGCAT 753487 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | ||| || |||||||| | ||| ||||| || ||| ||| || Sbjct 753468 CACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTACGACCATCTTC 753409 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || ||||| || ||||||| || | |||||| ||||||||||| ||||| || || | Sbjct 753408 AAGTTGTTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAGGAATGCCTTCCTTATCTTG 753349 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||||||| | | | |||| ||||| || | ||||| || || Sbjct 753348 GATCTTGTTCTTGACGTTTTCAATGGAATCAGAAGACTCGACTTCCAAAGTGATAGTCTT 753289 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || ||||| || || |||||||| |||||| Sbjct 753288 GCCGGTAAGTGTCTTGACAAAGATTTGCATG 753258 >seq1 Length=3088551 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | |||||| |||||||| | ||| ||||| || ||| ||| || Sbjct 606229 ACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCAGACAAAGTACGACCATCTTCG 606170 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || || ||||| ||||||| || | |||||| ||||||||||| ||||| || || | Sbjct 606169 AGTTGCTTTCCTGCAAAGATCAAGCGTTGCTGGTCTGGAGGAATGCCTTCCTTATCTTGG 606110 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || |||||| | | || |||| || || || | ||||| || || Sbjct 606109 ATCTTGTTCTTGACATTCTCAATAGAATCAGATGACTCAACTTCCAAAGTGATAGTCTTG 606050 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | ||| || |||||||||||||| Sbjct 606049 CCAGTCAAAGTCTTGACAAAGATCTGCAT 606021 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | |||||| |||||||| | ||| || || || ||| ||| || Sbjct 605773 ACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCTGACAAAGTACGACCATCTTCA 605714 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || ||||| || ||||||| | | |||||||||||| ||||| ||||| ||||| | | Sbjct 605713 AGTTGTTTGCCTGCAAAGATGAGACGTTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGA 605654 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||||| | | | |||| || || || | ||||| || || Sbjct 605653 ATCTTGTTCTTGACGTTTTCAATGGAATCAGATGACTCCACCTCCAAGGTGATAGTCTTG 605594 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 |||||||| || || || ||||| |||||| Sbjct 605593 CCAGTAAGGGTCTTGACGAAGATTTGCATG 605564 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | ||||||||||||||| | || || || || ||| ||| || Sbjct 606001 ACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCTGACAAAGTACGACCATCTTCA 605942 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || ||||| || ||||||| | | ||||| ||||||||||| ||||| || || | Sbjct 605941 AGTTGTTTGCCTGCAAAGATGAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTATCCTGG 605882 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||||| | | || |||| || || || | ||||| || || Sbjct 605881 ATCTTGTTCTTGACGTTTTCAATAGAATCAGATGACTCAACTTCCAAAGTGATAGTCTTG 605822 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | ||| || |||||||||||||| Sbjct 605821 CCAGTCAAAGTCTTGACAAAGATCTGCAT 605793 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 ||| | ||| ||||||||||| | || || || || ||| |||||| || || Sbjct 606452 GTGAAGAGTGGATTCCTTTTGGATATTGTAGTCTGACAAAGTACGACCATCCTCAAGTTG 606393 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 ||| || ||||||| || | |||||| ||||||||||| ||||| || || | || || Sbjct 606392 TTTGCCTGCAAAGATCAAGCGTTGCTGGTCTGGAGGAATGCCTTCCTTATCTTGGATCTT 606333 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 |||||| | | || |||| || || || | ||||| || || ||||| Sbjct 606332 GTTCTTGACATTCTCAATAGAATCAGATGACTCAACTTCCAAAGTGATAGTCTTGCCAGT 606273 Query 94984 AAGAGTTTTCACAAAGATCTGCAT 95007 | ||| || |||||||||||||| Sbjct 606272 CAAAGTCTTGACAAAGATCTGCAT 606249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290785330640