Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4 242 6e-60 seq12 219 7e-53 seq45 210 3e-50 seq1 208 1e-49 seq6 80.6 4e-11 >seq4 Length=1091430 Score = 242 bits (268), Expect = 6e-60 Identities = 216/268 (81%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||||||||||| ||| |||||| || ||||| ||||| || |||||||| ||||| Sbjct 655579 GCCAAGCGTCATCGCAAGAT-TCTTCGTGACAACATTCAAGGTATTACCAAGCCTGCTAT 655521 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| |||||||||||||| ||||||||| ||||||| ||| |||||||||||| Sbjct 655520 TCGTCGTCTTGCTCGTCGTGGTGGTGTCAAGCGTATCTCTGGCTTGATCTATGAAGAGAC 655461 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| |||| | ||| ||||||| | | || || | ||||||| | ||| || || Sbjct 655460 TCGTGGTGTTCTCAAGGTCTTCCTTGAAAATGTCATTCGTGATGCTGTTACCTACACTGA 655401 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||||| ||||||||||| || ||| | ||| |||||||||| | || |||||||| Sbjct 655400 ACACGCTAAGCGTAAGACTGTTACTTCCCTTGATGTCGTCTATGCTCTTAAGCGTCAAGG 655341 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| ||||||| || || ||||| Sbjct 655340 CCGTACTCTTTATGGCTTCGGCGGTTAA 655313 >seq12 Length=2893134 Score = 219 bits (242), Expect = 7e-53 Identities = 211/268 (79%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||||||| |||| |||||| || ||||| ||||| || |||||||| ||||| Sbjct 2320904 GCCAAGCGTCATCGCAAGAT-TCTTCGTGACAACATTCAAGGTATTACCAAGCCTGCTAT 2320962 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| |||||||||||||| ||||||||| ||||||| ||| |||||||||||| Sbjct 2320963 TCGTCGTCTTGCTCGTCGTGGTGGTGTCAAGCGTATCTCTGGTTTGATCTATGAAGAGAC 2321022 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| |||| | ||| |||| | | | || || | ||||||| | ||| || || Sbjct 2321023 TCGTGGTGTTCTCAAGGTCTTTTTGGAAAATGTCATTCGTGATGCTGTTACCTACACTGA 2321082 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || || |||||||| || ||| | ||| | |||||||| | || |||||||| Sbjct 2321083 ACACGCCAAGCGCAAGACTGTTACTTCCCTTGATGTTGTCTATGCTCTTAAGCGTCAAGG 2321142 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| ||||||| || || ||||| Sbjct 2321143 CCGTACTCTTTATGGCTTCGGCGGTTAA 2321170 >seq45 Length=1879501 Score = 210 bits (232), Expect = 3e-50 Identities = 209/268 (78%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCG-CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||||||||| |||| |||||| || ||||| ||||| || |||||||| ||||| Sbjct 82777 GCCAAGCGTCATCGTAAGAT-TCTTCGTGACAACATTCAAGGTATTACCAAGCCTGCTAT 82835 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| |||||||||||||| ||||||||| ||||||| ||| ||||||| || | Sbjct 82836 TCGTCGTCTTGCTCGTCGTGGTGGTGTCAAGCGTATCTCTGGTTTGATCTATGAGGAAAC 82895 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| |||| | ||| |||| | | | || || | ||||||| || ||| || || Sbjct 82896 TCGTGGTGTTCTCAAGGTCTTTTTGGAAAATGTCATTCGTGATGCTGTCACCTACACTGA 82955 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || || |||||||| || || | ||| | |||||||| | || |||||||| Sbjct 82956 ACACGCCAAGCGCAAGACTGTTACTTCTCTTGATGTTGTCTATGCTCTTAAGCGTCAAGG 83015 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| |||||||||| || ||||| Sbjct 83016 CCGTACTCTTTATGGTTTCGGCGGTTAA 83043 >seq1 Length=3088551 Score = 208 bits (230), Expect = 1e-49 Identities = 211/272 (78%), Gaps = 2/272 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||||||| ||| ||| || |||||||| || || || |||||||| ||||| Sbjct 1266317 GCTAAGCGTCATCGCAAGAT-TCTCCGTGATAACATTCAGGGCATTACCAAGCCTGCTAT 1266259 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| |||||||||||||| || |||||| ||||||| | |||||||||| | Sbjct 1266258 TCGTCGTCTTGCTCGTCGTGGTGGTGTGAAGCGTATCTCTGGTCTTATCTATGAAGAAAC 1266199 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| |||| | ||| ||||||| | | || || | ||||||| || || || || Sbjct 1266198 TCGTGGTGTTCTCAAGGTCTTCCTTGAAAATGTCATTCGTGATGCTGTCACTTACACTGA 1266139 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||||| || |||||||| || ||| | ||| | || ||||| | || || || || Sbjct 1266138 ACACGCTAAGCGCAAGACTGTTACTTCCCTTGATGTTGTTTATGCTCTTAAGCGCCAGGG 1266079 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 ||||| |||||||||| || ||||| ||| Sbjct 1266078 CCGTACTCTTTATGGTTTCGGTGGTTAAGCTT 1266047 >seq6 Length=802712 Score = 80.6 bits (88), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 16472 GGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCT 16531 || ||||| ||||| ||||| |||||||| |||||||||||||| ||||||||| ||||| Sbjct 776933 GGTATCACTAAGCCTGCTATTCGTCGTCTTGCTCGTCGTGGTGGTGTCAAGCGTATCTCT 776874 Query 16532 GG 16533 || Sbjct 776873 GG 776872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075132341282