Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq24 192 9e-44 seq74 179 6e-40 >seq24 Length=199139 Score = 192 bits (212), Expect = 9e-44 Identities = 365/532 (69%), Gaps = 4/532 (1%) Strand=Plus/Minus Query 193639 AACCTGCTGAGATCTATAATCTTGG-TGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATG 193697 |||| |||| |||| || ||||| ||||||| ||| || || || || ||||| ||| Sbjct 184158 AACCCACTGAAGTCTACAA-CTTGGCTGCTCAATCTCACGTCAAGGTGTCTTTTGATATG 184100 Query 193698 CCAGAGTATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGT 193757 | || || ||| | |||| |||||| | || ||| | | | | || || |||| Sbjct 184099 TCTGAATACACTGGTGATGTGGATGCTCTTGGTACTTTGCGTCTTTTGGATGCTATTCGC 184040 Query 193758 ATGTTGGGAATGGAGAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTATGGT 193817 | | ||| || | | |||||| |||| || || ||||| ||| |||||||| Sbjct 184039 ACTTGTGGATTGCAAGACCGTGTTCGTTTCTACCAAGCTTCTACTTCCGAGTTGTATGGT 183980 Query 193818 GGTGTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGT 193877 || | | ||||||| | |||||||| || || |||| || || || |||||| Sbjct 183979 AAAGTGGTTGAAACTCCACAAAAGGAAACCACTCCTTTCTATCCTCGTTCACCCTATGGT 183920 Query 193878 GTAGCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCAC 193937 || || ||||| |||||||| ||||||| || |||||||| || |||| | | Sbjct 183919 GTTGCCAAGTTATATGGTTACTGGATCACTGTCAACTATCGTGAATCCTATGACATGTAT 183860 Query 193938 GCTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACT 193997 || | |||||| ||||||||||||||||||||| | | || || ||||| || Sbjct 183859 GCATGCAATGGTATCCTCTTCAATCACGAATCTCCACGCCGTGGCCGTACTTTTGTGACA 183800 Query 193998 CGTAAGATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACA-GAAGATTCTTTATCT 194056 | |||||||| | | | | || | ||| | | ||| || ||| || | ||||| Sbjct 183799 AGAAAGATTACTCGTGCTGTTGCTGATATCCATTTGGGACGTCAAGAATGTT-TGTATCT 183741 Query 194057 TGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTG 194116 |||||| || |||| ||| | ||||||||||| ||| |||||||| |||| ||||| Sbjct 183740 TGGTAACATTGATGCCAAGCGTGATTGGGGACATGCACGTGATTATGTCGAAGGCATGTG 183681 Query 194117 GTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAA 194168 | | ||| | ||||| || | || || || | ||| | || || |||||| Sbjct 183680 GCTCATGCTTCAACAAGACAAGCCTGAAGACTTTGTTTTGGCCACTGGTGAA 183629 >seq74 Length=1162362 Score = 179 bits (198), Expect = 6e-40 Identities = 362/532 (68%), Gaps = 4/532 (1%) Strand=Plus/Plus Query 193639 AACCTGCTGAGATCTATAATCTTGG-TGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATG 193697 |||| |||| |||| || ||||| ||||||| ||| || || || || ||||| ||| Sbjct 830223 AACCCACTGAAGTCTACAA-CTTGGCTGCTCAATCTCACGTCAAGGTCTCTTTTGATATG 830281 Query 193698 CCAGAGTATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGT 193757 | || || ||| | |||| |||||| | || ||| | | | | || || |||| Sbjct 830282 TCTGAATACACTGGTGATGTGGATGCTCTTGGTACTTTGCGTCTTTTGGATGCTATTCGC 830341 Query 193758 ATGTTGGGAATGGAGAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTATGGT 193817 | | ||| || | | |||||| |||| || || ||||| ||| |||||||| Sbjct 830342 ACTTGTGGATTGCAAGATCGTGTTCGTTTCTACCAAGCTTCTACTTCCGAGTTGTATGGT 830401 Query 193818 GGTGTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGT 193877 || | | ||||||| | |||||||| || || |||| || || || |||||| Sbjct 830402 AAAGTGGTTGAAACTCCACAAAAGGAAACCACTCCTTTCTATCCTCGTTCACCCTATGGT 830461 Query 193878 GTAGCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCAC 193937 || || ||||| |||||||| ||||||| || |||||||| || |||| | | Sbjct 830462 GTTGCCAAGTTATATGGTTACTGGATCACTGTCAACTATCGTGAATCCTATGATATGTAT 830521 Query 193938 GCTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACT 193997 || | |||||||||||||||||||||||||||| | | || || ||||| || Sbjct 830522 GCATGCAATGGTATTCTCTTCAATCACGAATCTCCACGCCGTGGCCGTACTTTTGTGACA 830581 Query 193998 CGTAAGATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACA-GAAGATTCTTTATCT 194056 | ||||| || | | | | || | ||| | | ||| || ||| || | ||||| Sbjct 830582 AGAAAGATCACTCGTGCTGTTGCTGATATCCATTTGGGACGTCAAGAATGTT-TGTATCT 830640 Query 194057 TGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTG 194116 |||||| || |||| ||| | |||||||| || || || ||||| |||| ||||| Sbjct 830641 TGGTAACATTGATGCCAAGCGTGATTGGGGTCATGCTCGTGACTATGTCGAAGGCATGTG 830700 Query 194117 GTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAA 194168 | | ||| | ||||| || | || || || | ||| | || || |||||| Sbjct 830701 GCTCATGCTTCAACAAGACAAGCCTGAAGACTTTGTTTTGGCCACTGGTGAA 830752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807554453011440