Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq45 123 3e-23 seq2 123 3e-23 >seq45 Length=1879501 Score = 123 bits (136), Expect = 3e-23 Identities = 300/448 (67%), Gaps = 6/448 (1%) Strand=Plus/Plus Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 ||| |||||| || | ||||||||||| || || || |||| | || || || Sbjct 1418084 TTGGTAATCAGATACACGCTTTTCGAAAAAGTTGGTTTTGCCTTGAAGAGAGATCATGTC 1418143 Query 21247 CATAAAATCAAATGGATTTTCAG-ATTTAAATATTTTATTACAACCCAGTTCTGATAAT- 21304 |||||| ||||||||||| || ||| ||| || | | | || || || || Sbjct 1418144 CATAAAGTCAAATGGATTGGTAGCATTGTAATGCTTGTTGAGACCCAAGGC--GACAAGC 1418201 Query 21305 AATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAAT 21364 || | ||| || |||||||| || ||||||||||| | | ||||||||| |||| Sbjct 1418202 AAGCGATCGGCAACAAATTCAATGTATTGACACATGAGCTTGGCATTCATACCAATCAGG 1418261 Query 21365 TTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATA 21424 || |||||||| | ||||| || || ||| |||| || ||||||||||| ||| Sbjct 1418262 GACACGGGAAGAGCATCAGTCAAGAATTCTTGTTCAATAGCAACAGCTTCAACAATGATA 1418321 Query 21425 TTTATTAT-CCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAA 21483 | || | | ||| | || | | || || ||| | |||||| ||||| Sbjct 1418322 CCAAGAATACGTTCATGGGAT-GGTTGCTTGCGCAAATGAGAAAAGAGCAAACAAGCAAA 1418380 Query 21484 ATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCAT 21543 |||| || | ||||||||| | || | ||||| ||| || || || ||||| Sbjct 1418381 ATCAGTGTGAAGACCTTCATCACGGGAAATGAGCTCATTGCTAAAAGTCAAGCCTGGCAT 1418440 Query 21544 TAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTC 21603 | || | || || | |||||| || || ||||| | || |||||||| ||||| || Sbjct 1418441 AAGACCACGTTTCTTGAGCCAAAAGATGGAAGCAAAAGAGCCAGAAAAGAAGATGCCTTC 1418500 Query 21604 AACGGCAGCAAATGCAACTAATCGTTCA 21631 || |||||||| ||||| | |||||| Sbjct 1418501 TACAGCAGCAAAAGCAACAAGACGTTCA 1418528 >seq2 Length=1153633 Score = 123 bits (136), Expect = 3e-23 Identities = 263/387 (68%), Gaps = 7/387 (2%) Strand=Plus/Minus Query 21310 ATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTAC 21369 ||| || |||||||| || || |||||||| | | ||||||||| ||||| || Sbjct 770722 ATCCGCCACAAATTCAATGTACTGACACATGAGCTTGGCATTCATACCAATCAAAGAAAC 770663 Query 21370 AGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTAT 21429 ||| | ||| | ||| || || || || ||| || ||||||| ||| |||| Sbjct 770662 AGGTAAAGCATCTGTTAAGAATTCTTGCTCGATATTAACAGCTTCAATAATGATATCACG 770603 Query 21430 TATCC-TAGATGTACTAGGGGGAT-ACAATAATTGTTTAAACATCAAACATGCAAAATCA 21487 || | | |||| | || ||| || | || | ||||| | |||||||||||| Sbjct 770602 GATACGTTGATGAGAT-GGCTGATGACGAAGAT-GAGAAAACAAGAGACATGCAAAATCG 770545 Query 21488 CAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAAT 21547 ||| || |||||||| | || | || ||| ||||| | ||| ||||| ||| Sbjct 770544 GTATGTAATCCTTCATCACGTGAAATAAGCTCGTTACTGAATGTAAGACCTGGCATCAAT 770485 Query 21548 CCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACG 21607 || | |||||| | |||||| || || ||||| | || |||||||| ||||| || || Sbjct 770484 CCACGCTTTTTGAGCCAAAAGATAGAAGCAAAAGAACCAGAAAAGAAGATGCCTTCCACT 770425 Query 21608 GCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCT 21667 ||||| |||||||||| |||||| | | |||| | || | |||||| | Sbjct 770424 GCAGCGAATGCAACTAGACGTTCAGCAAA---AGATCCATTGGAAGAGATCCATCGAAAT 770368 Query 21668 GCCCATTTTGCCTTTTCTTTAATACAA 21694 ||||||| |||||| | || |||||| Sbjct 770367 GCCCATTCTGCCTTCTTCTTGATACAA 770341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531900307991760