Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq9 125 7e-24 seq4 105 6e-18 seq1 104 2e-17 seq73 95.1 1e-14 seq12 87.8 2e-12 seq34 84.2 2e-11 >seq9 Length=614693 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || || || ||||| ||||||| ||||||||||||||||| ||||||||| Sbjct 95446 CCACCACGTAAGCGAAGCACCAAATGTAAAGTCGACTCCTTTTGAATATTGTAATCGGAA 95387 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || || || ||||| ||| | || | ||| |||||||||||||| Sbjct 95386 AGTGTACGACCATCTTCAAGTTGTTTGCCAGCGAAAATGAGACGTTGCTGGTCCGGAGGA 95327 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| ||| || ||||||| | || | || ||| | || || | Sbjct 95326 ATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTTTCAATAGAATCAGATGATTCTACT 95267 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || ||||| || || || || ||||| Sbjct 95266 TCCAATGTGATGGTCTTTCCAGTGAGAGTCTTGACAAAGATTTGCAT 95220 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || ||||| || | || || || | || || || ||||| ||||||||||| Sbjct 95674 CCGCCACGCAAGCGTAATACCAAGTGCAACGTGGATTCTTTTTGGATGTTGTAATCAGAA 95615 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || ||||| ||||| ||| | || ||||| ||||| || ||||| Sbjct 95614 AGAGTACGGCCGTCTTCAAGCTGTTTGCCAGCGAAAATCAAACGTTGCTGATCAGGAGGA 95555 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || | ||||| | ||| | || ||||| || || | Sbjct 95554 ATACCTTCCTTGTCTTGAATCTTGTTCTTGACATTCTCAATAGAATCGGACGATTCCACT 95495 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || || || ||||| || || || || ||||| Sbjct 95494 TCAAGTGTGATAGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 95448 >seq4 Length=1091430 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| || || | || ||||||||||| ||||||||||| | Sbjct 753485 CCACCACGAAGACGAAGCACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAC 753426 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || || || |||||||| |||| ||||| |||||||| ||||| Sbjct 753425 AAAGTACGACCATCTTCAAGTTGTTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAGGA 753366 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || ||| || | ||||| | || | | ||| | ||||||| Sbjct 753365 ATGCCTTCCTTATCTTGGATCTTGTTCTTGACGTTTTCAATGGAATCAGAAGACTCGACT 753306 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | || || ||||| || || || || || || |||||| Sbjct 753305 TCCAAAGTGATAGTCTTGCCGGTAAGTGTCTTGACAAAGATTTGCATG 753258 >seq1 Length=3088551 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | || ||||||||||||||||||||||| | Sbjct 606247 CCACCACGAAGACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCAGAC 606188 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || || ||||| ||||| |||| || || |||||||| ||||| Sbjct 606187 AAAGTACGACCATCTTCGAGTTGCTTTCCTGCAAAGATCAAGCGTTGCTGGTCTGGAGGA 606128 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || ||| || | ||||| | ||| | || ||| | ||||| | Sbjct 606127 ATGCCTTCCTTATCTTGGATCTTGTTCTTGACATTCTCAATAGAATCAGATGACTCAACT 606068 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || || || | ||| || || || |||||||| Sbjct 606067 TCCAAAGTGATAGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 606021 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | || |||||||||||||||||||| || | Sbjct 605791 CCACCACGAAGACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCTGAC 605732 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || || || |||||||| |||| | ||| ||||| || || || Sbjct 605731 AAAGTACGACCATCTTCAAGTTGTTTGCCTGCAAAGATGAGACGTTGCTGATCTGGGGGA 605672 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || | ||||| | || | | ||| | ||||| | Sbjct 605671 ATGCCTTCCTTGTCTTGAATCTTGTTCTTGACGTTTTCAATGGAATCAGATGACTCCACC 605612 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | || || || || || || || ||||| || |||||| Sbjct 605611 TCCAAGGTGATAGTCTTGCCAGTAAGGGTCTTGACGAAGATTTGCATG 605564 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | || || |||||||| || ||||| || | Sbjct 606019 CCACCACGAAGACGAAGGACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCTGAC 605960 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || || || |||||||| |||| | |||||||||||| ||||| Sbjct 605959 AAAGTACGACCATCTTCAAGTTGTTTGCCTGCAAAGATGAGACGCTGCTGGTCTGGAGGA 605900 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || ||| || | ||||| | || | || ||| | ||||| | Sbjct 605899 ATGCCTTCCTTATCCTGGATCTTGTTCTTGACGTTTTCAATAGAATCAGATGACTCAACT 605840 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || || || | ||| || || || |||||||| Sbjct 605839 TCCAAAGTGATAGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 605793 >seq73 Length=1220876 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 145056 GATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGG 145115 ||||||| | || || || || ||||| |||||||| ||||| ||| || ||| | | Sbjct 415657 GATTGACAATTTGGAATTCACCAGCCAAGACACGACGTGTATACAAGTTGGATGTGTAAG 415598 Query 145116 GTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCA 145175 ||||||| | ||||| || ||||| || | || | ||| || ||||| || | Sbjct 415597 GTTCAAAGCATTCGTTGAAACCAAGGATCTGTGATGTGGATGCAGTAGGCATAGGAGCTA 415538 Query 145176 CCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCC 145235 |||| | ||||||||| | || ||||| | | |||||| ||| | |||||||| Sbjct 415537 CCAAAAGTGAATTGCGTAAACCATGCTTGGCTACTTTTTCCTTGAGCAAAGTCCAATCCC 415478 Query 145236 ATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAA 145275 ||| ||| || |||| |||||| ||| || ||||| Sbjct 415477 ATAAATCAGTAGGTGTCACACCCCACAAGTCATATTGCAA 415438 >seq12 Length=2893134 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | || ||||||||||| || ||||| || | Sbjct 1461613 CCACCACGAAGACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGGATATTGTAGTCAGAC 1461554 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| || |||||||| ||| | || ||||| |||||||| ||||| Sbjct 1461553 AAAGTACGACCATCCTCGAGTTGCTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGAGGA 1461494 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGA 131158 ||||| || || || ||| || ||||||| Sbjct 1461493 ATTCCCTCCTTATCTTGGATCTTTTGCTTGA 1461463 >seq34 Length=2204315 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | || ||||||||||| |||||||| || | Sbjct 1854167 CCACCACGAAGACGGAGGACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAC 1854108 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || || |||||||| ||| | || ||||| |||||||| ||||| Sbjct 1854107 AAAGTACGACCATCTTCAAGTTGCTTGCCAGCGAAAATCAAACGTTGCTGGTCTGGAGGA 1854048 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGA 131158 || ||||| || || || || ||||||| Sbjct 1854047 ATGCCTTCCTTATCTTGAATCTTTTGCTTGA 1854017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012363388160