Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq10 140 2e-28 seq1 125 5e-24 seq4 102 5e-17 seq9 98.7 7e-16 >seq10 Length=558796 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 8742 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 8801 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 8802 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 8836 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 10832 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 10891 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||| ||| Sbjct 10892 GCCTGTATTTAGCTTTA 10908 >seq1 Length=3088551 Score = 125 bits (138), Expect = 5e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||||| |||||||| |||||||||||| |||||||||| Sbjct 606249 TACCACCACGAAGACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCAG 606190 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||||| ||| | || || | ||| ||||| ||||| || | |||||| || || | | Sbjct 606189 ACAAAGTACGACCATCTTCGAGTTGCTTTCCTGCAAAGATCAAGCGTTGCTGGTCTGGAG 606130 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||| || || || || | ||| ||||||| | || ||| |||| Sbjct 606129 GAATGCCTTCCTTATCTTGGATCTTGTTCTTGACATTCTCAATAGAATCAGATGACTCAA 606070 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || ||||| || || ||||| || || || || |||||||| Sbjct 606069 CTTCCAAAGTGATAGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 606021 Score = 113 bits (124), Expect = 3e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||||| |||||||| |||||||||||| ||||| || | Sbjct 605793 TACCACCACGAAGACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCTG 605734 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||||| ||| | || || | |||||| || ||||| || || ||||| ||||| | || Sbjct 605733 ACAAAGTACGACCATCTTCAAGTTGTTTGCCTGCAAAGATGAGACGTTGCTGATCTGGGG 605674 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||| ||||| ||| || | ||| || || | | | ||| || | Sbjct 605673 GAATGCCTTCCTTGTCTTGAATCTTGTTCTTGACGTTTTCAATGGAATCAGATGACTCCA 605614 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || || || ||||| || || || | ||| || ||||| || |||||||| Sbjct 605613 CCTCCAAGGTGATAGTCTTGCCAGTAAGGGTCTTGACGAAGATTTGCATGTT 605562 >seq4 Length=1091430 Score = 102 bits (112), Expect = 5e-17 Identities = 166/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | |||||| ||||||||| ||||||||| || |||||||||| Sbjct 753487 TACCACCACGAAGACGAAGCACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAG 753428 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||||| ||| | || || | |||||| || ||||| || | ||||| || || | | Sbjct 753427 ACAAAGTACGACCATCTTCAAGTTGTTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAG 753368 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||| || || || || | ||| || || | | | ||| | || | Sbjct 753367 GAATGCCTTCCTTATCTTGGATCTTGTTCTTGACGTTTTCAATGGAATCAGAAGACTCGA 753308 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTACAAG 38327 |||| || || ||||| || || || | || || || || || |||||| | || ||| Sbjct 753307 CTTCCAAAGTGATAGTCTTGCCGGTAAGTGTCTTGACAAAGATTTGCATGGTGTAAAAG 753249 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | |||||| |||||||| |||||||| || |||||||||| Sbjct 753715 TACCACCACGAAGACGAAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAATCAG 753656 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||||| ||| | || || | ||| || || ||| || || ||||| || || | | Sbjct 753655 ACAAAGTACGGCCATCTTCAAGTTGCTTGCCACGAAAAATGAGACGTTGCTGGTCTGGAG 753596 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| || || || || | ||| || || | | || ||| ||||| Sbjct 753595 GAATACCTTCCTTATCTTGGATCTTATTCTTAACGTTTTCAATAGAATCAGAGGATTCAA 753536 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || || || || ||||| || || || || || ||||| Sbjct 753535 CTTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 753487 >seq9 Length=614693 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || || | ||||||||| | ||| ||||||||||||||||||||| | Sbjct 95448 TACCACCACGTAAGCGAAGCACCAAATGTAAAGTCGACTCCTTTTGAATATTGTAATCGG 95389 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| | || || | |||||| || || || || || ||||| || || | | Sbjct 95388 AAAGTGTACGACCATCTTCAAGTTGTTTGCCAGCGAAAATGAGACGTTGCTGGTCCGGAG 95329 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| |||||| || |||||||| || || | | || ||| ||| | Sbjct 95328 GAATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTTTCAATAGAATCAGATGATTCTA 95269 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| ||||| || || || || || | || || || || || ||||| Sbjct 95268 CTTCCAATGTGATGGTCTTTCCAGTGAGAGTCTTGACAAAGATTTGCAT 95220 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||| || | ||| || || ||||| || | ||| || ||||| || ||||||||||| Sbjct 95675 ACCGCCACGCAAGCGTAATACCAAGTGCAACGTGGATTCTTTTTGGATGTTGTAATCAGA 95616 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | ||| |||| || | ||||| || || || || | ||||| ||||| | || Sbjct 95615 AAGAGTACGGCCGTCTTCAAGCTGTTTGCCAGCGAAAATCAAACGTTGCTGATCAGGAGG 95556 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| ||||| ||| || | ||| ||||||| | || ||| ||| || Sbjct 95555 AATACCTTCCTTGTCTTGAATCTTGTTCTTGACATTCTCAATAGAATCGGACGATTCCAC 95496 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| | ||| ||||| || || || | || || || || || ||||| Sbjct 95495 TTCAAGTGTGATAGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 95448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946897919494