Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2 176 5e-39 seq45 143 3e-29 >seq2 Length=1153633 Score = 176 bits (194), Expect = 5e-39 Identities = 275/390 (71%), Gaps = 5/390 (1%) Strand=Plus/Minus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985 ||| || |||||||| ||||||||| |||| | | |||||| || | | | || Sbjct 770722 ATCCGCCACAAATTCAATGTACTGACACATGAGCTTGGCATTCATACCAATCAAAGAAAC 770663 Query 92986 AGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTAT 93045 ||||| ||| || || ||||| |||| |||||| ||| ||||| | | ||| || Sbjct 770662 AGGTAAAGCATCTGTTAAGAATTCTTGCTCGATATTAACAGCTTCAATAATGATATCACG 770603 Query 93046 TACTCTACTATTTGGTGGTTTTTGTACGAC-ATAATTGTACATTAAGCACGCAAAGTCGG 93104 | | || | ||| | || |||| || | ||| | || ||||| |||| Sbjct 770602 GATACGTTGATGAGATGGCTGATG-ACGAAGATGAGAAAACAAGAGACATGCAAAATCGG 770544 Query 93105 TATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTC 93164 ||||||| ||||| || ||||| || | ||| || |||||||| | |||||| | || || Sbjct 770543 TATGTAATCCTTCATCACGTGAAATAAGCTCGTTACTGAATGTAAGACCTGGCATCAATC 770484 Query 93165 CTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGG 93224 | || || ||||||||||| || ||||||||| ||||||||| || || |||||||| | Sbjct 770483 CACGCTTTTTGAGCCAAAAGATAGAAGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTG 770424 Query 93225 CTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAG 93284 | || ||||| || | |||||| |||||| | | ||| ||||||| || | Sbjct 770423 CAGCGAATGCAACTAGACGTTCAGCAAAAGATCC---ATTGGAAGAGATCCATCGAAATG 770367 Query 93285 CCCAATCGGCTTTTTTCTTAATACAAGGTA 93314 |||| || || || ||||| |||||||||| Sbjct 770366 CCCATTCTGCCTTCTTCTTGATACAAGGTA 770337 >seq45 Length=1879501 Score = 143 bits (158), Expect = 3e-29 Identities = 169/227 (74%), Gaps = 9/227 (4%) Strand=Plus/Plus Query 93089 AAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTT 93148 || || ||||| || || || | |||||| || || || || | ||||||||| || || Sbjct 1418370 AAACAAGCAAAATCAGTGTGAAGACCTTCATCACGGGAAATGAGCTCATTGCTAAAAGTC 1418429 Query 93149 AAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaa 93208 || ||||| | || || ||||||||||||||||| || ||||||||| |||||||| Sbjct 1418430 AAGCCTGGCATAAGACCACGTTTCTTGAGCCAAAAGATGGAAGCAAAAGAGCCAGAAAAG 1418489 Query 93209 aaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACT- 93267 || || ||||| || || ||||| || |||| |||||| ||||| |||| | | Sbjct 1418490 AAGATGCCTTCTACAGCAGCAAAAGCAACAAGACGTTCAGCAAA------GGAACCATTG 1418543 Query 93268 GCTG--ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGG 93312 | || ||||| || || ||||| || ||||| ||||| || ||||| Sbjct 1418544 GATGAAATCCACTTGAAGGCCCAGTCAGCTTTCTTCTTGATGCAAGG 1418590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860284903760