Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq9 159 3e-34 seq4 113 4e-20 seq1 104 2e-17 seq12 82.4 6e-11 >seq9 Length=614693 Score = 159 bits (176), Expect = 3e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||| | || || || || |||| |||||||||||| | || Sbjct 95448 ATGCAAATCTTTGTCAAGACTCTTACTGGCAAGACTATCACACTTGAAGTGGAATCGTCC 95507 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | | || || |||| | || |||||||||||||| |||||||| || ||||| Sbjct 95508 GATTCTATTGAGAATGTCAAGAACAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAG 95567 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || || ||||||||| | || || ||| || | || ||||||||| Sbjct 95568 CAACGTTTGATTTTCGCTGGCAAACAGCTTGAAGACGGCCGTACTCTTTCTGATTACAAC 95627 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || |||||||||||||| | || || || || || ||||| || ||| Sbjct 95628 ATCCAAAAAGAATCCACGTTGCACTTGGTATTACGCTTGCGTGGCGGT 95675 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||| | || || || || |||| | ||||| ||| | | Sbjct 95220 ATGCAAATCTTTGTCAAGACTCTCACTGGAAAGACCATCACATTGGAAGTAGAATCATCT 95279 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | | || | |||| ||||| || || |||||||| || ||||| || || || Sbjct 95280 GATTCTATTGAAAACGTCAAGCAAAAGATCCAGGACAAGGAAGGAATTCCTCCGGACCAG 95339 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || |||||||| | || ||| || || | ||||||||||| Sbjct 95340 CAACGTCTCATTTTCGCTGGCAAACAACTTGAAGATGGTCGTACACTTTCCGATTACAAT 95399 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| || || || ||||||| || | || || || || ||| Sbjct 95400 ATTCAAAAGGAGTCGACTTTACATTTGGTGCTTCGCTTACGTGGTGGT 95447 >seq4 Length=1091430 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||||| || || || || | ||| | ||||| || | | Sbjct 753715 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACCATTACTTTGGAAGTTGAGTCTTCT 753774 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | | || || |||| | || || ||||||||||| |||||||| || || || Sbjct 753775 GATTCTATTGAAAATGTCAAGAACAAGATCCAAGACAAGGAAGGTATTCCTCCAGACCAG 753834 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| |||||||| | || ||| ||| || | || || |||||| Sbjct 753835 CAACGTTTGATCTTTGCAGGCAAACAACTTGAAGATGGCCGTACTTTGTCTGACTACAAC 753894 Query 22399 ATTCAAAAAGAATCCAC 22415 || ||||| ||||| || Sbjct 753895 ATCCAAAAGGAATCTAC 753911 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||||| || || || || ||||| | ||||| ||| || | Sbjct 753487 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACCATCACTTTGGAAGTTGAATCCTCT 753546 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | | || | | || | || || ||||| ||||| |||||||| || || || Sbjct 753547 GATTCTATTGAAAACGTTAAGAATAAGATCCAAGATAAGGAAGGTATTCCTCCAGACCAG 753606 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||| ||||| || | || ||| ||| || | || ||||||||| Sbjct 753607 CAACGTCTCATTTTTCGTGGCAAGCAACTTGAAGATGGCCGTACTTTGTCTGATTACAAC 753666 Query 22399 ATTCAAAAAGAATCCAC 22415 || ||||| ||||| || Sbjct 753667 ATCCAAAAGGAATCTAC 753683 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | ||||| || || ||||| | ||||| || | | Sbjct 753259 ATGCAAATCTTTGTCAAGACACTTACCGGCAAGACTATCACTTTGGAAGTCGAGTCTTCT 753318 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| || | || | |||| | || || ||||| ||||| || ||||| || || || Sbjct 753319 GATTCCATTGAAAACGTCAAGAACAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCAG 753378 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| |||||||| | || ||| || || | || ||||||||| Sbjct 753379 CAACGTTTGATCTTTGCAGGCAAACAACTTGAAGATGGTCGTACTTTGTCTGATTACAAC 753438 Query 22399 ATTCAAAAAGAATCCAC 22415 || ||||| || ||||| Sbjct 753439 ATCCAAAAGGAGTCCAC 753455 >seq1 Length=3088551 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || |||||||| || || || || | || || || || |||| | || ||||| | Sbjct 605562 AACATGCAAATCTTCGTCAAGACCCTTACTGGCAAGACTATCACCTTGGAGGTGGAGTCA 605621 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||| || | || | |||| | || |||||||||||||| || ||||| || ||| Sbjct 605622 TCTGATTCCATTGAAAACGTCAAGAACAAGATTCAAGACAAGGAAGGCATTCCCCCAGAT 605681 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || |||||||| || ||||| |||||||| | || ||| || || | || || ||| Sbjct 605682 CAGCAACGTCTCATCTTTGCAGGCAAACAACTTGAAGATGGTCGTACTTTGTCAGACTAC 605741 Query 22396 AACATTCAAAAAGAATCCAC 22415 ||||||||||| || || || Sbjct 605742 AACATTCAAAAGGAGTCTAC 605761 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||||| || || || || ||||| | ||||| || | | Sbjct 606021 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACTATCACTTTGGAAGTTGAGTCATCT 606080 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | | || || |||| | || || ||||| ||||| || ||||| || || || Sbjct 606081 GATTCTATTGAGAATGTCAAGAACAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCAG 606140 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || ||||| || || || | || ||| || || | || ||||||||| Sbjct 606141 CAACGCTTGATCTTTGCAGGAAAGCAACTCGAAGATGGTCGTACTTTGTCTGATTACAAC 606200 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||| || || || Sbjct 606201 ATTCAAAAGGAGTCTAC 606217 >seq12 Length=2893134 Score = 82.4 bits (90), Expect = 6e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 128782 TCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCTGTT 128841 || || ||||| || ||||| ||| | || || ||||| |||||||||||||| || Sbjct 1076867 TCGACTGTAAACTTGATAGCATCCACAGCAGGACGAGTGCGTAAATAGTACATGCCAGTC 1076926 Query 128842 TTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGGTTGA 128901 || | ||| | ||||| | | ||| || | |||||| | || | |||| | Sbjct 1076927 TTAAGACCTTTCTTCCAGCCATAAAAGTGCATGCTAGTCAACTTGCCAAAGTTTGGTTCA 1076986 Query 128902 CTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCCATA 128961 | | ||||| || || |||||| ||||||||| | | ||| |||||||| |||||| Sbjct 1076987 CCAATGAAAATGTTCAAGCTTTGACTCTGATCAATATAAGCGCCACGATCGGCTGCCATA 1077046 Query 128962 CCAAT 128966 |||| Sbjct 1077047 TCAAT 1077051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727621457810