Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq24 163 7e-35 seq74 158 3e-33 seq1 136 9e-27 seq9 132 1e-25 seq2 129 1e-24 seq45 109 1e-18 >seq24 Length=199139 Score = 163 bits (180), Expect = 7e-35 Identities = 267/383 (70%), Gaps = 4/383 (1%) Strand=Plus/Minus Query 72416 CCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATAC 72475 |||||| ||| | || ||||||||||| |||||| |||| ||| || | ||||| || Sbjct 184007 CCAAGCTTCTACTTCCGAGTTGTATGGTAAAGTGGTTGAAACTCCACAAAAGGAAACCAC 183948 Query 72476 TCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAA 72535 ||| || |||||||| || || |||||||| ||||| || | ||| |||||| | Sbjct 183947 TCCTTTCTATCCTCGTTCACCCTATGGTGTTGCCAAGTTATATGGTTACTGGATCACTGT 183888 Query 72536 AAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAG 72595 || || ||||| || ||| ||||||||| |||||| || ||||||||||| Sbjct 183887 CAACTATCGTGAATCCTATGACATGTATGCATGCAATGGTATCCTCTTCAATCACGAATC 183828 Query 72596 TCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTT 72655 ||| | | |||| | || ||||| | || || || | || || ||| | Sbjct 183827 TCCACGCCGTGGCCGTACTTTTGTGACAAGAAAGATTACTCGTGCTGTTGCTGATA--TC 183770 Query 72656 CAATGGTGTCG--AAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGA 72713 || | | | || || |||| ||||||| ||||| || |||||||| | ||||||||| Sbjct 183769 CATTTGGGACGTCAAGAATGTTTGTATCTTGGTAACATTGATGCCAAGCGTGATTGGGGA 183710 Query 72714 TATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGAC 72773 |||| ||||| || |||| |||||| | ||||| |||||||| | || || ||| Sbjct 183709 CATGCACGTGATTATGTCGAAGGCATGTGGCTCATGCTTCAACAAGACAAGCCTGAAGAC 183650 Query 72774 TATGTGATTGCAACAGGGAAAAC 72796 | ||| | || || || |||| Sbjct 183649 TTTGTTTTGGCCACTGGTGAAAC 183627 >seq74 Length=1162362 Score = 158 bits (174), Expect = 3e-33 Identities = 266/383 (69%), Gaps = 4/383 (1%) Strand=Plus/Plus Query 72416 CCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATAC 72475 |||||| ||| | || ||||||||||| |||||| |||| ||| || | ||||| || Sbjct 830374 CCAAGCTTCTACTTCCGAGTTGTATGGTAAAGTGGTTGAAACTCCACAAAAGGAAACCAC 830433 Query 72476 TCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAA 72535 ||| || |||||||| || || |||||||| ||||| || | ||| |||||| | Sbjct 830434 TCCTTTCTATCCTCGTTCACCCTATGGTGTTGCCAAGTTATATGGTTACTGGATCACTGT 830493 Query 72536 AAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAG 72595 || || ||||| || ||| | ||||||| |||||| ||| ||||||||||| Sbjct 830494 CAACTATCGTGAATCCTATGATATGTATGCATGCAATGGTATTCTCTTCAATCACGAATC 830553 Query 72596 TCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTT 72655 ||| | | |||| | || ||||| | || ||||| | || || ||| | Sbjct 830554 TCCACGCCGTGGCCGTACTTTTGTGACAAGAAAGATCACTCGTGCTGTTGCTGATA--TC 830611 Query 72656 CAATGGTGTCG--AAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGA 72713 || | | | || || |||| ||||||| ||||| || |||||||| | |||||||| Sbjct 830612 CATTTGGGACGTCAAGAATGTTTGTATCTTGGTAACATTGATGCCAAGCGTGATTGGGGT 830671 Query 72714 TATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGAC 72773 |||| || || || |||| |||||| | ||||| |||||||| | || || ||| Sbjct 830672 CATGCTCGTGACTATGTCGAAGGCATGTGGCTCATGCTTCAACAAGACAAGCCTGAAGAC 830731 Query 72774 TATGTGATTGCAACAGGGAAAAC 72796 | ||| | || || || |||| Sbjct 830732 TTTGTTTTGGCCACTGGTGAAAC 830754 >seq1 Length=3088551 Score = 136 bits (150), Expect = 9e-27 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | |||| || ||| ||||||||||| ||||| | Sbjct 606019 CCACCACGAAGACGAAGGACCAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCTGAC 605960 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| | |||||| ||||| ||||| |||||||| || ||||| Sbjct 605959 AAAGTACGACCATCTTCAAGTTGTTTGCCTGCAAAGATGAGACGCTGCTGG---TCTGGA 605903 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| ||||||||||| || || |||||||| |||||||| || || Sbjct 605902 GGAATGCCTTCCTTATCCTGGATCTTGTTCTTGACGTTTTCAATAGAATCAGATGACTCA 605843 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||||| ||||| || |||| ||||||||| || |||||||| Sbjct 605842 ACTTCCAAAGTGATAGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 605793 Score = 118 bits (130), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || || |||| ||| ||| ||||||||||| ||||| | Sbjct 606475 CCACCACGAAGACGAAGGACAAGGTGAAGAGTGGATTCCTTTTGGATATTGTAGTCTGAC 606416 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 | || || || || || | |||||| ||||| ||||||| || || || ||| Sbjct 606415 AAAGTACGACCATCCTCAAGTTGTTTGCCTGCAAAGATCAAGCGTTGCTG---GTCTGGA 606359 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || ||||| ||||| ||||| || || || || || |||||||| || || Sbjct 606358 GGAATGCCTTCCTTATCTTGGATCTTGTTCTTGACATTCTCAATAGAATCAGATGACTCA 606299 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||||| ||||| || |||| ||||||||| || |||||||| Sbjct 606298 ACTTCCAAAGTGATAGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 606249 Score = 100 bits (110), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | |||| || || ||||| || || ||||| | Sbjct 605791 CCACCACGAAGACGAAGGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCTGAC 605732 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| | |||||| ||||| ||||| ||||| || ||| |||||| Sbjct 605731 AAAGTACGACCATCTTCAAGTTGTTTGCCTGCAAAGATGAGACGTTGCTGA---TCTGGG 605675 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| || || || || || || |||||||| || ||||| || || Sbjct 605674 GGAATGCCTTCCTTGTCTTGAATCTTGTTCTTGACGTTTTCAATGGAATCAGATGACTCC 605615 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| ||||| || || || ||||||||||| || ||||| Sbjct 605614 ACCTCCAAGGTGATAGTCTTGCCAGTAAGGGTCTTGACGAAGATTTGCAT 605565 >seq9 Length=614693 Score = 132 bits (146), Expect = 1e-25 Identities = 151/200 (76%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| ||||| || |||| || || || || ||||| | |||||| || ||||| Sbjct 95410 TCCTTTTGAATATTGTAATCGGAAAGTGTACGACCATCTTCAAGTTGTTTGCCAGCGAAA 95351 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTT 288401 || ||||| || || || |||||||| || |||||||| ||| |||| ||||| Sbjct 95350 ATGAGACGTTGCTGGTCCGGAGGAATTCCTTCCTTGTCCTGGATCTTTTGCTTG-ACGTT 95292 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||||||| ||||||||||| | ||||| ||||| || || ||||||||||| Sbjct 95291 TTCAATAGAATCAGATGATTCTACTTCCAATGTGATGGTCTTTCCAGTGAGAGTCTTGAC 95232 Query 288462 GAATATCTGCATTATGTTAT 288481 || || |||||| ||| || Sbjct 95231 AAAGATTTGCATTGTGTAAT 95212 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 288276 CGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCC 288335 |||| |||||||||||| || || || | || || || |||||||| | ||||| || Sbjct 95645 CGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGGCCGTCTTCAAGCTGTTTGCC 95586 Query 288336 TGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTT 288395 ||||| |||| ||| || ||| | || || ||||| || || || || || || Sbjct 95585 AGCGAAAATCAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGAATCTTGTTCTT 95526 Query 288396 CACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGT 288455 || || || ||||||||| |||||| ||||| || ||||| ||||| || || ||||| Sbjct 95525 GACATTCTCAATAGAATCGGACGATTCCACTTCAAGTGTGATAGTCTTGCCAGTAAGAGT 95466 Query 288456 CTTGACGAATATCTGCAT 288473 |||||| || || ||||| Sbjct 95465 CTTGACAAAGATTTGCAT 95448 >seq2 Length=1153633 Score = 129 bits (142), Expect = 1e-24 Identities = 182/254 (72%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 269091 CATAATGGAAGCAGTTACAAACGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTAT 269150 ||| || ||||| |||| | ||| |||| ||| | || ||| | || |||| | Sbjct 770611 CATTATTGAAGCTGTTAATATCGAGCAAGAATTCTTAACAGATGCTTTACCTGTTTCTTT 770670 Query 269151 GATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTT 269210 ||| |||||||||||| | |||||| ||| || || ||||| ||||| |||||| | || Sbjct 770671 GATTGGTATGAATGCCAAGCTCATGTGTCAGTACATTGAATTTGTGGCGGATCGTCTTTT 770730 Query 269211 CACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACT 269270 ||| || || || || || |||| | |||||||| | ||||||||| | Sbjct 770731 GGTGGCTCTTGGCGTAGACAAGCATTATCATTCAACCAATCCCTTTGACTTTATGGACAT 770790 Query 269271 AATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGC--GTGTCAGCGACTATCAACGT 269328 ||||| || | || ||||| |||||||| || |||| |||||| || ||||||||| Sbjct 770791 GATTTCTCTTCAGGGCAAGACCAACTTCTTTGAGAAGCGAGTGTCA--GATTATCAACGT 770848 Query 269329 CCTGGTGTAATGAA 269342 ||||||| ||||| Sbjct 770849 GCTGGTGTTATGAA 770862 >seq45 Length=1879501 Score = 109 bits (120), Expect = 1e-18 Identities = 176/247 (71%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 269098 GAAGCAGTTACAAACGAAAAAGAGTTCATTTGTGACGCTAT-CCCATGTTCTATGATCGG 269156 ||||| ||| | | ||| |||| ||| | ||| ||| | ||| ||| | |||| || Sbjct 1418311 GAAGCTGTTGCTATTGAACAAGAATTCTTGACTGATGCTCTTCCCGTGTCCC-TGATTGG 1418253 Query 269157 TATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTAT-CTTCACGG 269215 |||||||||| | |||||| |||||| || ||||| || || ||||| | ||| || Sbjct 1418252 TATGAATGCCAAGCTCATGTGTCAATACATTGAATTTGTTGCCGATCGCTTGCTTGTCGC 1418193 Query 269216 CACTCGGTTATGAGAAAGTGT-ACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATT 269274 | | || | | | ||| | ||||| | | ||||| || | ||||||||| | || Sbjct 1418192 C--TTGGGTCTCAACAAGCATTACAATGCTACCAATCCATTTGACTTTATGGACATGATC 1418135 Query 269275 TCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGT 269334 || || |||| || || ||||| |||||||||||||| || || |||||| ||||| Sbjct 1418134 TCTCTTCAAGGCAAAACCAACTTTTTCGAAAAGCGTGTATCTGATTACCAACGTGCTGGT 1418075 Query 269335 GTAATGA 269341 || |||| Sbjct 1418074 GTCATGA 1418068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653281540172