Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20idahoensis_20var._20thermophila_20[genbank_20GCA_5F0009451 15.1_202014-08-05] 74 sequences; 30,708,998 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq12 167 2e-36 seq4 136 4e-27 seq9 129 6e-25 seq1 114 1e-20 >seq12 Length=2893134 Score = 167 bits (184), Expect = 2e-36 Identities = 559/854 (65%), Gaps = 36/854 (4%) Strand=Plus/Plus Query 154592 CAAG-TTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCACAAAT 154650 |||| ||||| || || | ||| |||| ||| || | ||||| |||| ||| | || Sbjct 1077845 CAAGATTGCATACAGCCACTTCATCAGGACTTGAATACTCGACAATCTCTGTGCAAAGAT 1077904 Query 154651 TACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCTTTGT 154710 | |||||| |||||||||| ||||| |||||| |||||| |||||||| || |||| Sbjct 1077905 TGCTGCATTTGATGGTGCCCAAGTTTTGCTGATTGGATTTGCGATTGCATGCATCCTTGT 1077964 Query 154711 ACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTG--TGCGAAACAGACT 154768 | || ||| | || || ||||| ||| | ||| | || | | | ||| | | Sbjct 1077965 ATAACATGAATGGACCACCAGTTTCAGTTTGTGCTTCCAAGATAGCATACCAAA--GCTT 1078022 Query 154769 TCGCGCCT---CAACTTGACAAGTAAATCGATTTTCGCTCTCATATTGTTCGTACAGTTT 154825 | | |||| |||| | || | | || ||| | ||||||||| | |||| | Sbjct 1078023 TTGTGCCTTGACAACCTTACGTGCACGTCC---TTCACGCTCATATTGGTGATACAACTC 1078079 Query 154826 TTCAAACTCTAAACTGTACACGTCCGACAAACCGGGA-CAGCGGTCGGG------ACACA 154878 ||||| ||| | | || || ||| || || | | | ||| | || Sbjct 1078080 CTCAAATTCTTTTCCCCAAACTTCATGCAATCCAGGTGCTTCACTTGGGCAAAAGAGACT 1078139 Query 154879 TCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAG 154938 |||| |||| |||| | || |||| ||| ||||| || || | |||||| | Sbjct 1078140 CCAATCACCA-------TTTTCCTCAACACGTTGCATGAACAAGTCTGGAATCCACAAGG 1078192 Query 154939 CGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTC--GCTTTAAATTCAA 154996 | || ||||||||||| || || ||||| ||| ||| ||| || | |||| ||| Sbjct 1078193 CATAAAACAAATCACGTGCACGATTTTCTTCTTTGCC-ATGGTTCTTGCGT-AAATCCAA 1078250 Query 154997 AAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCT--TTGCGT 155054 ||| ||| | | || | ||||| || || | ||| | ||| | || || | || | Sbjct 1078251 AAAGTCAAAGACATCAGGATGCCATGGTTCAAGATAGATGGCAAATGCACCAGGTCGCTT 1078310 Query 155055 TTT-CCTCCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCAC 155113 || || ||||||||||| | || || ||| ||||| || || | || || | | Sbjct 1078311 GTTACCACCTTGATCCACATAGCGAGCAGTATTGTTGTATACACGTAGCATGGGCACAAT 1078370 Query 155114 GCCGCTGGCCGTGCCGTTGGTGCCACGTATCGCGCTGCCGCGAGCACGCGCTTTATGAAC 155173 ||| ||| ||| ||||| ||| || ||| ||||| || || | Sbjct 1078371 GCCATTGGAATAGCCATTGGTACCAGCAATATATGAGCCAGATGCACGAATGTTGTGGAT 1078430 Query 155174 ATTAACGCCCAAACCTCC-GCCGTATTTAGATATTTGCGCACAGTCCGCCAAAGTTTCGT 155232 ||||| || | ||| || ||||| ||| || || || | || | | || || | Sbjct 1078431 ATTAAGACCAATACCACCTGCCGTCTTT-GAAATCTGGGAGCAAATCTTGAGTGTCTCAT 1078489 Query 155233 ACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAACACGAAGATAATTGAGGTT 155292 | || |||| ||| |||||| |||| |||||||||||||| || |||||||| || Sbjct 1078490 AGATGCCTTCAATGGAGTCTTCCTTCATAGTCAACAAGAAACATGATGATAATTGTGGAC 1078549 Query 155293 GAGGGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAACATTTTGTT-GGCGGTT 155351 |||| |||||| || | ||| ||||| || ||||| || || | | || | Sbjct 1078550 GAGGTGTGCCGGCATTGAAAAGTGTTGGACTGGCATGTGTGAA-ATAGCGCTCGGACATC 1078608 Query 155352 AAGTTGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATACCGATCGCCACGCGC 155411 |||||||||||||| ||||| || |||||||| ||| || ||||| | || || ||| Sbjct 1078609 AAGTTGTAAGTTTCAATGGCAGCATCAATGTCTTCACCATGAATACCAACTGCAACACGC 1078668 Query 155412 ATCAGCATGTGTTG 155425 |||| ||||||||| Sbjct 1078669 ATCAACATGTGTTG 1078682 >seq4 Length=1091430 Score = 136 bits (150), Expect = 4e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| | |||| || ||||| ||||| ||||||||||| | | || || | || Sbjct 753699 AAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGACAAAGTACGGCCATC 753640 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 |||||| |||||||| | ||||||| || |||||||| |||||||| ||||| || || Sbjct 753639 TTCAAGTTGCTTGCCACGAAAAATGAGACGTTGCTGGTCTGGAGGAATACCTTCCTTATC 753580 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || || | ||| || || | | |||| || || ||||| | ||| | ||| Sbjct 753579 TTGGATCTTATTCTTAACGTTTTCAATAGAATCAGAGGATTCAACTTCCAAAGTGATGGT 753520 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| |||||||| || || || |||||||| Sbjct 753519 CTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 753487 Score = 105 bits (116), Expect = 7e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| | |||| || || || ||||| ||||||||||| | | || || | || Sbjct 753471 AAGCACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTACGACCATC 753412 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 |||||| || ||||| ||| | || | || |||||||| |||||||| ||||| || || Sbjct 753411 TTCAAGTTGTTTGCCTGCAAAGATCAAACGTTGCTGGTCTGGAGGAATGCCTTCCTTATC 753352 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || || | ||| || || | | |||| | || ||||| | ||| | || Sbjct 753351 TTGGATCTTGTTCTTGACGTTTTCAATGGAATCAGAAGACTCGACTTCCAAAGTGATAGT 753292 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||| | || || || || |||||||| Sbjct 753291 CTTGCCGGTAAGTGTCTTGACAAAGATTTGCAT 753259 >seq9 Length=614693 Score = 129 bits (142), Expect = 6e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || || | |||||| | ||| | ||||| || |||||||| |||||||| | Sbjct 95447 ACCACCACGTAAGCGAAGCACCAAATGTAAAGTCGACTCCTTTTGAATATTGTAATCGGA 95388 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | |||||||| || ||||| || ||||||| || |||||||| ||||| Sbjct 95387 AAGTGTACGACCATCTTCAAGTTGTTTGCCAGCGAAAATGAGACGTTGCTGGTCCGGAGG 95328 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || |||||||| || || | | |||| | || || Sbjct 95327 AATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTTTCAATAGAATCAGATGATTCTAC 95268 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| | || | |||||| || || | ||| || || || ||||||||| Sbjct 95267 TTCCAATGTGATGGTCTTTCCAGTGAGAGTCTTGACAAAGATTTGCATT 95219 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| ||||| | | || | || | ||| ||||||||||| ||||||||||| | Sbjct 95675 ACCGCCACGCAAGCGTAATACCAAGTGCAACGTGGATTCTTTTTGGATGTTGTAATCAGA 95616 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || ||||||||||||| ||||| || |||| | || ||||| || ||||| Sbjct 95615 AAGAGTACGGCCGTCTTCAAGCTGTTTGCCAGCGAAAATCAAACGTTGCTGATCAGGAGG 95556 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || ||||| || || | ||| ||| ||| | | ||| | ||||| Sbjct 95555 AATACCTTCCTTGTCTTGAATCTTGTTCTTGACATTCTCAATAGAATCGGACGATTCCAC 95496 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | |||||||| || | ||| || || || |||||||| Sbjct 95495 TTCAAGTGTGATAGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 95448 >seq1 Length=3088551 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||| ||||| || ||||| |||| | || || | |||||||| || Sbjct 605995 TGAAGAGTAGATTCCTTTTGGATATTGTAGTCTGACAAAGTACGACCATCTTCAAGTTGT 605936 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 ||||| ||| | ||||| ||||||||||| |||||||| ||||| || || || || || Sbjct 605935 TTGCCTGCAAAGATGAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTATCCTGGATCTTG 605876 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 | ||| || || | | |||| | || ||||| | ||| | |||||||| ||| Sbjct 605875 TTCTTGACGTTTTCAATAGAATCAGATGACTCAACTTCCAAAGTGATAGTCTTGCCAGTC 605816 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 ||||| || || || || ||||| Sbjct 605815 AAAGTCTTGACAAAGATCTGCAT 605793 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || || ||||||||||||||||| | | || || | ||||| || ||| Sbjct 606223 TGAAGAGTAGACTCCTTTTGAATGTTGTAATCAGACAAAGTACGACCATCTTCGAGTTGC 606164 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || ||| | || | || |||||||| |||||||| ||||| || ||||| || || Sbjct 606163 TTTCCTGCAAAGATCAAGCGTTGCTGGTCTGGAGGAATGCCTTCCTTATCTTGGATCTTG 606104 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 | ||| ||| ||| | | |||| | || ||||| | ||| | |||||||| ||| Sbjct 606103 TTCTTGACATTCTCAATAGAATCAGATGACTCAACTTCCAAAGTGATAGTCTTGCCAGTC 606044 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 ||||| || || || || ||||| Sbjct 606043 AAAGTCTTGACAAAGATCTGCAT 606021 Score = 102 bits (112), Expect = 8e-17 Identities = 154/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || || |||||||||||||| |||| | || || | |||||||| || Sbjct 605767 TGAAGAGTAGACTCCTTTTGAATGTTGTAGTCTGACAAAGTACGACCATCTTCAAGTTGT 605708 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 ||||| ||| | ||||| || ||||| || || ||||| ||||| || ||||| || || Sbjct 605707 TTGCCTGCAAAGATGAGACGTTGCTGATCTGGGGGAATGCCTTCCTTGTCTTGAATCTTG 605648 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 | ||| || || | | |||| | ||||| || | || | |||||||| || Sbjct 605647 TTCTTGACGTTTTCAATGGAATCAGATGACTCCACCTCCAAGGTGATAGTCTTGCCAGTA 605588 Query 64421 AAAGTTTTTACGAAAATTTGCATTTT--AATAATGATA 64456 | || || ||||| |||||||| || || | ||||| Sbjct 605587 AGGGTCTTGACGAAGATTTGCATGTTGAAAGAGTGATA 605550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644337828560